Analysis of interatomic Contacts of Structural Units in PDB entry:
6T0Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6T0Y entry

There is 1 chain in PDB entry 6T0Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2GLU 271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6T0Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 21Right-handed 310
Helix 2
AA2
A
36 40Right-handed 310
Helix 3
AA3
A
51 67Right-handed alpha
Helix 4
AA4
A
69 71Right-handed 310
Helix 5
AA5
A
88 92Right-handed 310
Helix 6
AA6
A
98 102Right-handed 310
Helix 7
AA7
A
144 150Right-handed alpha
Helix 8
AA8
A
151 163Right-handed alpha
Helix 9
AA9
A
167 171Right-handed 310
Helix 10
AB1
A
187 195Right-handed alpha
Helix 11
AB2
A
196 198Right-handed 310
Helix 12
AB3
A
217 229Right-handed alpha
Helix 13
AB4
A
232 234Right-handed 310
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There are 3 sheets in PDB entry 6T0Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
A
12 15anti-parallel
Strand 3
A
24 28anti-parallel
Strand 4
A
263 268anti-parallel
Strand 5
A
117 122anti-parallel
Strand 6
A
73 74parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 86first strand
Strand 2
A
108 111parallel
Strand 3
A
137 143anti-parallel
Strand 4
A
126 132anti-parallel
Strand 5
A
172 175anti-parallel
Strand 6
A
236 238parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 186first strand
Strand 2
A
213 216anti-parallel
Strand 3
A
206 210anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il