Analysis of interatomic Contacts of Structural Units in PDB entry:
6T1D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6T1D entry

There are 4 chains in PDB entry 6T1D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 36	ALA 373
B	CYS 36	ALA 373
C	CYS 36	ALA 373
D	CYS 36	PRO 363

There are no helices in PDB entry 6T1D

There are 36 sheets in PDB entry 6T1D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	44	first strand
Strand 2	A	281	285	anti-parallel
Strand 3	A	249	259	anti-parallel
Strand 4	A	307	316	anti-parallel
Strand 5	A	321	325	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	57	first strand
Strand 2	A	194	197	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	124	first strand
Strand 2	A	87	104	anti-parallel
Strand 3	A	146	155	anti-parallel
Strand 4	A	160	164	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	124	first strand
Strand 2	A	87	104	anti-parallel
Strand 3	A	129	138	anti-parallel
Strand 4	A	71	80	anti-parallel
Strand 5	A	170	171	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	222	first strand
Strand 2	A	354	358	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	274	first strand
Strand 2	A	261	266	anti-parallel
Strand 3	A	293	301	anti-parallel
Strand 4	A	234	242	anti-parallel
Strand 5	A	331	333	anti-parallel
Strand 6	A	351	352	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	44	first strand
Strand 2	B	281	285	anti-parallel
Strand 3	B	249	259	anti-parallel
Strand 4	B	307	316	anti-parallel
Strand 5	B	321	325	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	57	first strand
Strand 2	B	194	197	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	113	first strand
Strand 2	B	99	104	anti-parallel
Strand 3	B	129	138	anti-parallel
Strand 4	B	71	80	anti-parallel
Strand 5	B	170	171	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	124	first strand
Strand 2	B	87	97	anti-parallel
Strand 3	B	146	155	anti-parallel
Strand 4	B	160	164	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	222	first strand
Strand 2	B	354	358	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	274	first strand
Strand 2	B	261	266	anti-parallel
Strand 3	B	293	301	anti-parallel
Strand 4	B	234	242	anti-parallel
Strand 5	B	331	333	anti-parallel
Strand 6	B	351	352	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	44	first strand
Strand 2	C	281	285	anti-parallel
Strand 3	C	249	259	anti-parallel
Strand 4	C	307	316	anti-parallel
Strand 5	C	321	325	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	57	first strand
Strand 2	C	194	197	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	113	first strand
Strand 2	C	99	104	anti-parallel
Strand 3	C	129	138	anti-parallel
Strand 4	C	71	80	anti-parallel
Strand 5	C	170	171	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	124	first strand
Strand 2	C	87	97	anti-parallel
Strand 3	C	146	155	anti-parallel
Strand 4	C	160	164	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	222	first strand
Strand 2	C	354	358	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	274	first strand
Strand 2	C	261	266	anti-parallel
Strand 3	C	292	301	anti-parallel
Strand 4	C	234	243	anti-parallel
Strand 5	C	331	333	anti-parallel
Strand 6	C	351	352	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	44	first strand
Strand 2	D	281	285	anti-parallel
Strand 3	D	249	259	anti-parallel
Strand 4	D	307	316	anti-parallel
Strand 5	D	321	325	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	57	first strand
Strand 2	D	194	198	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	113	first strand
Strand 2	D	99	104	anti-parallel
Strand 3	D	129	138	anti-parallel
Strand 4	D	71	80	anti-parallel
Strand 5	D	170	171	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	124	first strand
Strand 2	D	87	97	anti-parallel
Strand 3	D	146	155	anti-parallel
Strand 4	D	160	164	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	222	first strand
Strand 2	D	354	358	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	269	274	first strand
Strand 2	D	261	266	anti-parallel
Strand 3	D	293	301	anti-parallel
Strand 4	D	234	242	anti-parallel
Strand 5	D	331	333	anti-parallel
Strand 6	D	351	352	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	44	first strand
Strand 2	E	281	285	anti-parallel
Strand 3	E	249	259	anti-parallel
Strand 4	E	307	316	anti-parallel
Strand 5	E	321	325	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	55	57	first strand
Strand 2	E	194	197	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	107	124	first strand
Strand 2	E	87	104	anti-parallel
Strand 3	E	146	155	anti-parallel
Strand 4	E	160	164	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	107	124	first strand
Strand 2	E	87	104	anti-parallel
Strand 3	E	129	138	anti-parallel
Strand 4	E	71	80	anti-parallel
Strand 5	E	170	171	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	219	222	first strand
Strand 2	E	354	358	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	269	274	first strand
Strand 2	E	261	266	anti-parallel
Strand 3	E	292	301	anti-parallel
Strand 4	E	234	243	anti-parallel
Strand 5	E	331	333	anti-parallel
Strand 6	E	351	352	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	44	first strand
Strand 2	F	281	285	anti-parallel
Strand 3	F	249	259	anti-parallel
Strand 4	F	307	316	anti-parallel
Strand 5	F	321	325	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	55	57	first strand
Strand 2	F	194	197	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	107	113	first strand
Strand 2	F	99	104	anti-parallel
Strand 3	F	129	138	anti-parallel
Strand 4	F	71	80	anti-parallel
Strand 5	F	170	171	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	119	124	first strand
Strand 2	F	87	97	anti-parallel
Strand 3	F	146	155	anti-parallel
Strand 4	F	160	164	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	219	222	first strand
Strand 2	F	354	358	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	269	274	first strand
Strand 2	F	261	266	anti-parallel
Strand 3	F	293	301	anti-parallel
Strand 4	F	234	242	anti-parallel
Strand 5	F	331	333	anti-parallel
Strand 6	F	351	352	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6T1D

Analysis of interatomic Contacts of Structural Units in PDB entry:
6T1D