Analysis of interatomic Contacts of Structural Units in PDB entry:
6T1F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6T1F entry

There are 8 chains in PDB entry 6T1F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 44ASN 238
B
 SER 44LEU 239
C
 SER 44ASN 238
D
 SER 44ALA 236
E
 G 1 C 22
F
 G 1 C 22
G
 G 1 C 22
H
 G 1 C 22
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 6T1F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 79Right-handed alpha
Helix 2
AA2
A
101 112Right-handed alpha
Helix 3
AA3
A
124 140Right-handed alpha
Helix 4
AA4
A
143 156Right-handed alpha
Helix 5
AA5
A
161 170Right-handed alpha
Helix 6
AA6
A
172 182Right-handed alpha
Helix 7
AA7
A
183 185Right-handed 310
Helix 8
AA8
A
186 196Right-handed alpha
Helix 9
AA9
A
199 205Right-handed alpha
Helix 10
AB1
A
211 223Right-handed alpha
Helix 11
AB2
A
225 235Right-handed alpha
Helix 12
AB3
B
64 74Right-handed alpha
Helix 13
AB4
B
101 112Right-handed alpha
Helix 14
AB5
B
124 139Right-handed alpha
Helix 15
AB6
B
143 157Right-handed alpha
Helix 16
AB7
B
161 170Right-handed alpha
Helix 17
AB8
B
172 182Right-handed alpha
Helix 18
AB9
B
183 185Right-handed 310
Helix 19
AC1
B
186 196Right-handed alpha
Helix 20
AC2
B
199 205Right-handed alpha
Helix 21
AC3
B
211 223Right-handed alpha
Helix 22
AC4
B
225 235Right-handed alpha
Helix 23
AC5
C
64 79Right-handed alpha
Helix 24
AC6
C
101 112Right-handed alpha
Helix 25
AC7
C
124 140Right-handed alpha
Helix 26
AC8
C
143 156Right-handed alpha
Helix 27
AC9
C
161 170Right-handed alpha
Helix 28
AD1
C
172 182Right-handed alpha
Helix 29
AD2
C
183 185Right-handed 310
Helix 30
AD3
C
186 196Right-handed alpha
Helix 31
AD4
C
199 205Right-handed alpha
Helix 32
AD5
C
211 223Right-handed alpha
Helix 33
AD6
C
225 235Right-handed alpha
Helix 34
AD7
D
64 74Right-handed alpha
Helix 35
AD8
D
101 112Right-handed alpha
Helix 36
AD9
D
124 139Right-handed alpha
Helix 37
AE1
D
143 156Right-handed alpha
Helix 38
AE2
D
161 170Right-handed alpha
Helix 39
AE3
D
172 182Right-handed alpha
Helix 40
AE4
D
183 185Right-handed 310
Helix 41
AE5
D
186 196Right-handed alpha
Helix 42
AE6
D
199 205Right-handed alpha
Helix 43
AE7
D
211 222Right-handed alpha
Helix 44
AE8
D
225 235Right-handed alpha
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There are 4 sheets in PDB entry 6T1F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
115 120anti-parallel
Strand 3
A
84 88parallel
Strand 4
A
96 100anti-parallel
Strand 5
A
52 53parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 48first strand
Strand 2
B
115 120anti-parallel
Strand 3
B
84 88parallel
Strand 4
B
96 100anti-parallel
Strand 5
B
52 53parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 48first strand
Strand 2
C
115 120anti-parallel
Strand 3
C
84 88parallel
Strand 4
C
96 100anti-parallel
Strand 5
C
52 53parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
46 48first strand
Strand 2
D
115 120anti-parallel
Strand 3
D
84 88parallel
Strand 4
D
96 100anti-parallel
Strand 5
D
52 53parallel
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