Analysis of interatomic Contacts of Structural Units in PDB entry:
6T1U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6T1U entry

There are 2 chains in PDB entry 6T1U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 45	TRP 679
B	SER 45	TRP 679

There are 51 helices in PDB entry 6T1U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	55	Right-handed alpha
Helix 2	AA2	A	68	86	Right-handed alpha
Helix 3	AA3	A	95	97	Right-handed 310
Helix 4	AA4	A	101	105	Right-handed 310
Helix 5	AA5	A	127	137	Right-handed alpha
Helix 6	AA6	A	160	173	Right-handed alpha
Helix 7	AA7	A	190	209	Right-handed alpha
Helix 8	AA8	A	244	248	Right-handed 310
Helix 9	AA9	A	311	322	Right-handed alpha
Helix 10	AB1	A	351	358	Right-handed alpha
Helix 11	AB2	A	366	374	Right-handed alpha
Helix 12	AB3	A	375	377	Right-handed 310
Helix 13	AB4	A	379	392	Right-handed alpha
Helix 14	AB5	A	392	400	Right-handed alpha
Helix 15	AB6	A	401	404	Right-handed 310
Helix 16	AB7	A	406	415	Right-handed alpha
Helix 17	AB8	A	424	432	Right-handed alpha
Helix 18	AB9	A	472	486	Right-handed alpha
Helix 19	AC1	A	500	504	Right-handed 310
Helix 20	AC2	A	534	536	Right-handed 310
Helix 21	AC3	A	537	554	Right-handed alpha
Helix 22	AC4	A	578	588	Right-handed alpha
Helix 23	AC5	A	607	615	Right-handed alpha
Helix 24	AC6	A	615	625	Right-handed alpha
Helix 25	AC7	A	637	655	Right-handed alpha
Helix 26	AC8	A	657	671	Right-handed alpha
Helix 27	AC9	B	47	55	Right-handed alpha
Helix 28	AD1	B	68	86	Right-handed alpha
Helix 29	AD2	B	95	97	Right-handed 310
Helix 30	AD3	B	101	105	Right-handed 310
Helix 31	AD4	B	127	137	Right-handed alpha
Helix 32	AD5	B	160	173	Right-handed alpha
Helix 33	AD6	B	190	209	Right-handed alpha
Helix 34	AD7	B	244	248	Right-handed 310
Helix 35	AD8	B	311	322	Right-handed alpha
Helix 36	AD9	B	351	358	Right-handed alpha
Helix 37	AE1	B	366	374	Right-handed alpha
Helix 38	AE2	B	375	377	Right-handed 310
Helix 39	AE3	B	379	392	Right-handed alpha
Helix 40	AE4	B	392	400	Right-handed alpha
Helix 41	AE5	B	406	415	Right-handed alpha
Helix 42	AE6	B	424	432	Right-handed alpha
Helix 43	AE7	B	472	486	Right-handed alpha
Helix 44	AE8	B	500	504	Right-handed 310
Helix 45	AE9	B	534	536	Right-handed 310
Helix 46	AF1	B	537	554	Right-handed alpha
Helix 47	AF2	B	578	588	Right-handed alpha
Helix 48	AF3	B	607	615	Right-handed alpha
Helix 49	AF4	B	615	625	Right-handed alpha
Helix 50	AF5	B	637	655	Right-handed alpha
Helix 51	AF6	B	657	671	Right-handed alpha

There are 12 sheets in PDB entry 6T1U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	93	first strand
Strand 2	A	59	64	parallel
Strand 3	A	110	118	parallel
Strand 4	A	145	152	parallel
Strand 5	A	176	177	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	123	first strand
Strand 2	A	110	118	anti-parallel
Strand 3	A	145	152	parallel
Strand 4	A	182	185	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	227	first strand
Strand 2	A	331	336	anti-parallel
Strand 3	A	349	350	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	438	441	first strand
Strand 2	A	303	306	anti-parallel
Strand 3	A	509	515	anti-parallel
Strand 4	A	266	275	anti-parallel
Strand 5	A	284	290	anti-parallel
Strand 6	A	452	458	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	461	463	first strand
Strand 2	A	469	471	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	591	597	first strand
Strand 2	A	561	567	parallel
Strand 3	A	529	532	parallel
Strand 4	A	628	634	parallel
Strand 5	A	674	679	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	93	first strand
Strand 2	B	59	64	parallel
Strand 3	B	110	118	parallel
Strand 4	B	145	152	parallel
Strand 5	B	176	177	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	123	first strand
Strand 2	B	110	118	anti-parallel
Strand 3	B	145	152	parallel
Strand 4	B	182	185	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	227	first strand
Strand 2	B	331	336	anti-parallel
Strand 3	B	349	350	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	438	441	first strand
Strand 2	B	303	306	anti-parallel
Strand 3	B	509	515	anti-parallel
Strand 4	B	266	275	anti-parallel
Strand 5	B	284	290	anti-parallel
Strand 6	B	452	458	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	461	463	first strand
Strand 2	B	469	471	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	591	597	first strand
Strand 2	B	561	567	parallel
Strand 3	B	529	532	parallel
Strand 4	B	628	634	parallel
Strand 5	B	674	679	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6T1U

Analysis of interatomic Contacts of Structural Units in PDB entry:
6T1U