Analysis of interatomic Contacts of Structural Units in PDB entry:
6T2A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6T2A entry

There are 2 chains in PDB entry 6T2A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 365LEU 570
B
 LEU 366LEU 570
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6T2A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
367 379Right-handed alpha
Helix 2
AA2
A
420 431Right-handed alpha
Helix 3
AA3
A
435 442Right-handed 310
Helix 4
AA4
A
445 454Right-handed alpha
Helix 5
AA5
A
465 475Right-handed alpha
Helix 6
AA6
A
488 493Right-handed alpha
Helix 7
AA7
A
495 504Right-handed alpha
Helix 8
AA8
A
505 507Right-handed 310
Helix 9
AA9
A
530 544Right-handed alpha
Helix 10
AB1
A
556 561Right-handed alpha
Helix 11
AB2
B
367 379Right-handed alpha
Helix 12
AB3
B
420 431Right-handed alpha
Helix 13
AB4
B
435 440Right-handed 310
Helix 14
AB5
B
445 454Right-handed alpha
Helix 15
AB6
B
465 475Right-handed alpha
Helix 16
AB7
B
488 493Right-handed alpha
Helix 17
AB8
B
495 504Right-handed alpha
Helix 18
AB9
B
505 507Right-handed 310
Helix 19
AC1
B
530 544Right-handed alpha
Helix 20
AC2
B
556 561Right-handed alpha
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There are 4 sheets in PDB entry 6T2A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 392first strand
Strand 2
A
400 404anti-parallel
Strand 3
A
410 415anti-parallel
Strand 4
A
552 553parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 462first strand
Strand 2
A
481 484parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
388 394first strand
Strand 2
B
397 404anti-parallel
Strand 3
B
410 415anti-parallel
Strand 4
B
552 553parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
459 462first strand
Strand 2
B
481 484parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il