Analysis of interatomic Contacts of Structural Units in PDB entry:
6T2U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6T2U entry

There are 4 chains in PDB entry 6T2U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 5	GLY 1174
C	MET 1	GLN 1121
D	ALA 10	SER 606
X	T 4	T 76

There are124 helices in PDB entry 6T2U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	28	43	Right-handed alpha
Helix 2	AA2	B	45	49	Right-handed 310
Helix 3	AA3	B	55	59	Right-handed 310
Helix 4	AA4	B	65	90	Right-handed alpha
Helix 5	AA5	B	94	104	Right-handed alpha
Helix 6	AA6	B	107	120	Right-handed alpha
Helix 7	AA7	B	128	140	Right-handed alpha
Helix 8	AA8	B	140	145	Right-handed alpha
Helix 9	AA9	B	156	173	Right-handed alpha
Helix 10	AB1	B	176	187	Right-handed alpha
Helix 11	AB2	B	189	202	Right-handed alpha
Helix 12	AB3	B	217	239	Right-handed alpha
Helix 13	AB4	B	254	264	Right-handed alpha
Helix 14	AB5	B	275	281	Right-handed 310
Helix 15	AB6	B	282	289	Right-handed alpha
Helix 16	AB7	B	307	317	Right-handed alpha
Helix 17	AB8	B	323	347	Right-handed alpha
Helix 18	AB9	B	350	364	Right-handed alpha
Helix 19	AC1	B	366	378	Right-handed alpha
Helix 20	AC2	B	390	401	Right-handed alpha
Helix 21	AC3	B	414	418	Right-handed 310
Helix 22	AC4	B	426	437	Right-handed alpha
Helix 23	AC5	B	450	461	Right-handed alpha
Helix 24	AC6	B	511	534	Right-handed alpha
Helix 25	AC7	B	560	573	Right-handed alpha
Helix 26	AC8	B	586	589	Right-handed 310
Helix 27	AC9	B	590	605	Right-handed alpha
Helix 28	AD1	B	608	617	Right-handed alpha
Helix 29	AD2	B	624	634	Right-handed alpha
Helix 30	AD3	B	634	655	Right-handed alpha
Helix 31	AD4	B	656	668	Right-handed alpha
Helix 32	AD5	B	669	677	Right-handed alpha
Helix 33	AD6	B	680	699	Right-handed alpha
Helix 34	AD7	B	703	717	Right-handed alpha
Helix 35	AD8	B	783	807	Right-handed alpha
Helix 36	AD9	B	831	836	Right-handed 310
Helix 37	AE1	B	837	843	Right-handed alpha
Helix 38	AE2	B	849	860	Right-handed alpha
Helix 39	AE3	B	948	962	Right-handed alpha
Helix 40	AE4	B	969	981	Right-handed alpha
Helix 41	AE5	B	986	1000	Right-handed alpha
Helix 42	AE6	B	1008	1012	Right-handed 310
Helix 43	AE7	B	1032	1044	Right-handed alpha
Helix 44	AE8	B	1045	1048	Right-handed 310
Helix 45	AE9	B	1094	1106	Right-handed alpha
Helix 46	AF1	B	1107	1126	Right-handed alpha
Helix 47	AF2	B	1130	1134	Right-handed alpha
Helix 48	AF3	B	1144	1146	Right-handed 310
Helix 49	AF4	B	1163	1174	Right-handed alpha
Helix 50	AF5	C	9	24	Right-handed alpha
Helix 51	AF6	C	39	55	Right-handed alpha
Helix 52	AF7	C	64	77	Right-handed alpha
Helix 53	AF8	C	87	102	Right-handed alpha
Helix 54	AF9	C	108	116	Right-handed alpha
Helix 55	AG1	C	122	142	Right-handed alpha
Helix 56	AG2	C	142	152	Right-handed alpha
Helix 57	AG3	C	161	179	Right-handed alpha
Helix 58	AG4	C	189	199	Right-handed alpha
Helix 59	AG5	C	220	232	Right-handed alpha
Helix 60	AG6	C	253	263	Right-handed alpha
Helix 61	AG7	C	297	304	Right-handed alpha
Helix 62	AG8	C	304	316	Right-handed alpha
Helix 63	AG9	C	333	344	Right-handed alpha
Helix 64	AH1	C	354	360	Right-handed alpha
Helix 65	AH2	C	381	400	Right-handed alpha
Helix 66	AH3	C	404	406	Right-handed 310
Helix 67	AH4	C	414	428	Right-handed alpha
Helix 68	AH5	C	447	459	Right-handed alpha
Helix 69	AH6	C	466	475	Right-handed alpha
Helix 70	AH7	C	476	483	Right-handed alpha
Helix 71	AH8	C	486	500	Right-handed alpha
Helix 72	AH9	C	507	514	Right-handed alpha
Helix 73	AI1	C	523	537	Right-handed alpha
Helix 74	AI2	C	555	557	Right-handed 310
Helix 75	AI3	C	558	574	Right-handed alpha
Helix 76	AI4	C	587	599	Right-handed alpha
Helix 77	AI5	C	605	625	Right-handed alpha
Helix 78	AI6	C	633	646	Right-handed alpha
Helix 79	AI7	C	707	722	Right-handed alpha
Helix 80	AI8	C	745	758	Right-handed alpha
Helix 81	AI9	C	769	780	Right-handed alpha
Helix 82	AJ1	C	803	805	Right-handed 310
Helix 83	AJ2	C	806	812	Right-handed alpha
Helix 84	AJ3	C	833	843	Right-handed alpha
Helix 85	AJ4	C	843	851	Right-handed alpha
Helix 86	AJ5	C	874	889	Right-handed alpha
Helix 87	AJ6	C	893	904	Right-handed alpha
Helix 88	AJ7	C	910	932	Right-handed alpha
Helix 89	AJ8	C	933	935	Right-handed 310
Helix 90	AJ9	C	973	989	Right-handed alpha
Helix 91	AK1	C	1012	1033	Right-handed alpha
Helix 92	AK2	C	1038	1049	Right-handed alpha
Helix 93	AK3	C	1060	1076	Right-handed alpha
Helix 94	AK4	C	1098	1113	Right-handed alpha
Helix 95	AK5	C	1113	1119	Right-handed alpha
Helix 96	AK6	D	11	15	Right-handed alpha
Helix 97	AK7	D	17	28	Right-handed alpha
Helix 98	AK8	D	32	49	Right-handed alpha
Helix 99	AK9	D	55	61	Right-handed alpha
Helix 100	AL1	D	64	72	Right-handed alpha
Helix 101	AL2	D	80	88	Right-handed alpha
Helix 102	AL3	D	110	125	Right-handed alpha
Helix 103	AL4	D	133	145	Right-handed alpha
Helix 104	AL5	D	152	164	Right-handed alpha
Helix 105	AL6	D	176	192	Right-handed alpha
Helix 106	AL7	D	205	221	Right-handed alpha
Helix 107	AL8	D	240	244	Right-handed alpha
Helix 108	AL9	D	270	274	Right-handed 310
Helix 109	AM1	D	275	286	Right-handed alpha
Helix 110	AM2	D	308	315	Right-handed alpha
Helix 111	AM3	D	316	319	Right-handed 310
Helix 112	AM4	D	322	334	Right-handed alpha
Helix 113	AM5	D	345	352	Right-handed alpha
Helix 114	AM6	D	365	375	Right-handed alpha
Helix 115	AM7	D	377	387	Right-handed alpha
Helix 116	AM8	D	388	391	Right-handed 310
Helix 117	AM9	D	400	415	Right-handed alpha
Helix 118	AN1	D	415	424	Right-handed alpha
Helix 119	AN2	D	427	436	Right-handed alpha
Helix 120	AN3	D	450	465	Right-handed alpha
Helix 121	AN4	D	523	527	Right-handed 310
Helix 122	AN5	D	562	572	Right-handed alpha
Helix 123	AN6	D	582	592	Right-handed alpha
Helix 124	AN7	D	599	604	Right-handed alpha

There are 17 sheets in PDB entry 6T2U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	7	first strand
Strand 2	B	439	442	parallel
Strand 3	B	17	22	parallel
Strand 4	B	408	413	parallel
Strand 5	B	380	384	parallel
Strand 6	B	61	62	parallel
Strand 7	B	126	127	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	152	first strand
Strand 2	B	348	349	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	208	first strand
Strand 2	B	776	778	parallel
Strand 3	B	767	769	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	487	490	first strand
Strand 2	B	539	542	anti-parallel
Strand 3	B	545	548	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	578	580	first strand
Strand 2	B	736	740	parallel
Strand 3	B	554	558	parallel
Strand 4	B	749	754	parallel
Strand 5	B	809	817	parallel
Strand 6	B	499	503	parallel
Strand 7	B	865	869	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1017	1027	first strand
Strand 2	B	1060	1072	anti-parallel
Strand 3	B	1075	1082	anti-parallel
Strand 4	B	1135	1142	parallel
Strand 5	B	1155	1158	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	61	first strand
Strand 2	C	33	36	parallel
Strand 3	C	211	214	parallel
Strand 4	C	236	241	parallel
Strand 5	C	2	7	parallel
Strand 6	C	320	325	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	266	first strand
Strand 2	C	273	274	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	365	366	first strand
Strand 2	C	759	760	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	437	439	first strand
Strand 2	C	659	663	parallel
Strand 3	C	408	412	parallel
Strand 4	C	672	678	parallel
Strand 5	C	723	732	parallel
Strand 6	C	374	379	parallel
Strand 7	C	781	783	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	442	443	first strand
Strand 2	C	649	650	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	939	947	first strand
Strand 2	C	950	960	anti-parallel
Strand 3	C	963	967	anti-parallel
Strand 4	C	995	999	parallel
Strand 5	C	1005	1008	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1050	1051	first strand
Strand 2	C	1056	1057	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	106	109	anti-parallel
Strand 3	D	100	102	anti-parallel
Strand 4	D	91	92	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	170	first strand
Strand 2	D	291	296	parallel
Strand 3	D	265	268	parallel
Strand 4	D	199	203	parallel
Strand 5	D	237	239	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	393	396	first strand
Strand 2	D	573	580	parallel
Strand 3	D	546	552	parallel
Strand 4	D	438	442	parallel
Strand 5	D	535	537	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	519	522	first strand
Strand 2	D	508	513	anti-parallel
Strand 3	D	498	503	anti-parallel
Strand 4	D	481	483	anti-parallel
Strand 5	D	531	532	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6T2U

Analysis of interatomic Contacts of Structural Units in PDB entry:
6T2U