Analysis of interatomic Contacts of Structural Units in PDB entry:
6T3F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6T3F entry

There are 3 chains in PDB entry 6T3F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	THR 24	ALA 477
L	THR 1	CYS 211
H	GLY 10	VAL 208

There are 24 helices in PDB entry 6T3F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	29	36	Right-handed alpha
Helix 2	AA2	F	65	72	Right-handed 310
Helix 3	AA3	F	74	100	Right-handed alpha
Helix 4	AA4	F	116	121	Right-handed alpha
Helix 5	AA5	F	124	146	Right-handed alpha
Helix 6	AA6	F	147	154	Right-handed alpha
Helix 7	AA7	F	175	182	Right-handed alpha
Helix 8	AA8	F	191	215	Right-handed alpha
Helix 9	AA9	F	228	232	Right-handed alpha
Helix 10	AB1	F	233	236	Right-handed 310
Helix 11	AB2	F	238	247	Right-handed alpha
Helix 12	AB3	F	252	259	Right-handed alpha
Helix 13	AB4	F	328	331	Right-handed 310
Helix 14	AB5	F	349	358	Right-handed alpha
Helix 15	AB6	F	359	363	Right-handed 310
Helix 16	AB7	F	437	442	Right-handed alpha
Helix 17	AB8	F	452	477	Right-handed alpha
Helix 18	AB9	L	79	83	Right-handed 310
Helix 19	AC1	L	121	126	Right-handed alpha
Helix 20	AC2	L	127	129	Right-handed 310
Helix 21	AC3	L	181	188	Right-handed alpha
Helix 22	AC4	H	28	32	Right-handed 310
Helix 23	AC5	H	83	87	Right-handed 310
Helix 24	AC6	H	154	158	Right-handed 310

There are 17 sheets in PDB entry 6T3F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	158	161	first strand
Strand 2	F	169	173	anti-parallel
Strand 3	F	38	60	parallel
Strand 4	F	275	298	anti-parallel
Strand 5	F	337	340	first strand
Strand 6	F	332	333	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	226	227	first strand
Strand 2	F	263	270	anti-parallel
Strand 3	F	275	298	anti-parallel
Strand 4	F	38	60	anti-parallel
Strand 5	F	315	319	first strand
Strand 6	F	322	326	anti-parallel
Strand 7	F	345	346	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	101	102	first strand
Strand 2	F	114	115	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	301	302	first strand
Strand 2	F	307	310	anti-parallel
Strand 3	F	365	367	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	376	379	first strand
Strand 2	F	382	385	anti-parallel
Strand 3	F	410	412	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	400	401	first strand
Strand 2	F	392	394	anti-parallel
Strand 3	F	419	422	anti-parallel
Strand 4	F	425	428	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	102	107	parallel
Strand 3	L	85	93	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	102	107	parallel
Strand 3	L	85	93	anti-parallel
Strand 4	L	95	98	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	117	first strand
Strand 2	L	130	139	anti-parallel
Strand 3	L	172	180	anti-parallel
Strand 4	L	158	162	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	152	153	first strand
Strand 2	L	144	149	anti-parallel
Strand 3	L	191	197	anti-parallel
Strand 4	L	200	206	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	94	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	94	anti-parallel
Strand 4	H	102	103	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	21	first strand
Strand 2	H	78	82	anti-parallel
Strand 3	H	67	71	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	122	first strand
Strand 2	H	135	145	anti-parallel
Strand 3	H	176	185	anti-parallel
Strand 4	H	164	165	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	122	first strand
Strand 2	H	135	145	anti-parallel
Strand 3	H	176	185	anti-parallel
Strand 4	H	169	170	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	151	153	first strand
Strand 2	H	194	197	anti-parallel
Strand 3	H	202	204	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6T3F

Analysis of interatomic Contacts of Structural Units in PDB entry:
6T3F