Analysis of interatomic Contacts of Structural Units in PDB entry:
6T3Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6T3Y entry

There are 2 chains in PDB entry 6T3Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4GLU 186
B
 ILE 6GLU 224
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 6T3Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 56Right-handed alpha
Helix 2
AA2
A
61 82Right-handed alpha
Helix 3
AA3
B
86 88Right-handed 310
Helix 4
AA4
B
89 98Right-handed alpha
Helix 5
AA5
B
99 108Right-handed alpha
Helix 6
AA6
B
112 122Right-handed alpha
Helix 7
AA7
B
123 125Right-handed 310
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There are 8 sheets in PDB entry 6T3Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
34 40anti-parallel
Strand 3
A
22 31anti-parallel
Strand 4
A
6 18anti-parallel
Strand 5
B
40 53anti-parallel
Strand 6
B
58 67anti-parallel
Strand 7
B
70 76anti-parallel
Strand 8
B
82 84anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
B
7 8parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 98first strand
Strand 2
A
108 117anti-parallel
Strand 3
A
150 158anti-parallel
Strand 4
A
138 139anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 98first strand
Strand 2
A
108 117anti-parallel
Strand 3
A
150 158anti-parallel
Strand 4
A
143 144anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
122 128anti-parallel
Strand 3
A
166 172anti-parallel
Strand 4
A
179 183anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 139first strand
Strand 2
B
149 157anti-parallel
Strand 3
B
190 197anti-parallel
Strand 4
B
177 179anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 139first strand
Strand 2
B
149 157anti-parallel
Strand 3
B
190 197anti-parallel
Strand 4
B
183 184anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 172first strand
Strand 2
B
163 168anti-parallel
Strand 3
B
206 211anti-parallel
Strand 4
B
219 222anti-parallel
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