Analysis of interatomic Contacts of Structural Units in PDB entry:
6T41


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6T41 entry

There are 2 chains in PDB entry 6T41 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP -2LEU 359
B
 ASP -2PRO 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 6T41. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 13Right-handed alpha
Helix 2
AA2
A
15 19Right-handed alpha
Helix 3
AA3
A
60 71Right-handed alpha
Helix 4
AA4
A
104 117Right-handed alpha
Helix 5
AA5
A
126 145Right-handed alpha
Helix 6
AA6
A
153 155Right-handed 310
Helix 7
AA7
A
178 182Right-handed 310
Helix 8
AA8
A
201 206Right-handed alpha
Helix 9
AA9
A
212 230Right-handed alpha
Helix 10
AB1
A
248 260Right-handed alpha
Helix 11
AB2
A
263 273Right-handed 310
Helix 12
AB3
A
275 283Right-handed alpha
Helix 13
AB4
A
284 289Right-handed 310
Helix 14
AB5
A
292 299Right-handed alpha
Helix 15
AB6
A
306 316Right-handed alpha
Helix 16
AB7
A
319 323Right-handed 310
Helix 17
AB8
A
325 331Right-handed alpha
Helix 18
AB9
A
332 336Right-handed 310
Helix 19
AC1
B
4 7Right-handed 310
Helix 20
AC2
B
8 15Right-handed alpha
Helix 21
AC3
B
17 26Right-handed alpha
Helix 22
AC4
B
27 31Right-handed 310
Helix 23
AC5
B
33 55Right-handed alpha
Helix 24
AC6
B
58 76Right-handed alpha
Helix 25
AC7
B
82 97Right-handed alpha
Helix 26
AC8
B
104 120Right-handed alpha
Helix 27
AC9
B
131 146Right-handed alpha
Helix 28
AD1
B
155 167Right-handed alpha
Helix 29
AD2
B
168 184Right-handed alpha
Helix 30
AD3
B
185 186Right-handed 310
Helix 31
AD4
B
187 191Right-handed 310
Helix 32
AD5
B
193 209Right-handed alpha
Helix 33
AD6
B
213 219Right-handed alpha
Helix 34
AD7
B
223 244Right-handed alpha
Helix 35
AD8
B
245 257Right-handed alpha
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There are 3 sheets in PDB entry 6T41. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
33 40anti-parallel
Strand 3
A
26 28anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
33 40anti-parallel
Strand 3
A
49 54anti-parallel
Strand 4
A
92 98anti-parallel
Strand 5
A
81 87anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 103first strand
Strand 2
A
157 159anti-parallel
Strand 3
A
169 171anti-parallel
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