Analysis of interatomic Contacts of Structural Units in PDB entry:
6T48


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6T48 entry

There are 4 chains in PDB entry 6T48 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4ALA 274
B
 SER 1GLN 244
C
 GLY 1GLN 243
D
 GLY 22LYS 69
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6T48. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 39Right-handed 310
Helix 2
AA2
A
45 50Right-handed alpha
Helix 3
AA3
A
61 64Right-handed 310
Helix 4
AA4
A
65 71Right-handed alpha
Helix 5
AA5
A
95 103Right-handed alpha
Helix 6
AA6
A
151 156Right-handed 310
Helix 7
AA7
A
198 202Right-handed 310
Helix 8
AA8
A
205 209Right-handed 310
Helix 9
AA9
B
2 6Right-handed alpha
Helix 10
AB1
B
33 35Right-handed 310
Helix 11
AB2
B
54 58Right-handed 310
Helix 12
AB3
B
81 85Right-handed 310
Helix 13
AB4
B
87 96Right-handed alpha
Helix 14
AB5
B
137 142Right-handed alpha
Helix 15
AB6
B
143 147Right-handed 310
Helix 16
AB7
B
161 168Right-handed 310
Helix 17
AB8
C
43 48Right-handed alpha
Helix 18
AB9
C
62 66Right-handed 310
Helix 19
AC1
C
97 104Right-handed alpha
Helix 20
AC2
C
143 148Right-handed alpha
Helix 21
AC3
C
186 191Right-handed 310
Helix 22
AC4
D
35 39Right-handed 310
Helix 23
AC5
D
50 55Right-handed alpha
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There are 10 sheets in PDB entry 6T48. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 89first strand
Strand 2
A
212 217anti-parallel
Strand 3
A
133 139anti-parallel
Strand 4
A
161 165anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 109first strand
Strand 2
A
238 240anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 175first strand
Strand 2
A
111 121anti-parallel
Strand 3
A
225 235anti-parallel
Strand 4
A
74 80anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
19 23anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
225 231anti-parallel
Strand 3
B
103 109anti-parallel
Strand 4
B
180 185anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 80first strand
Strand 2
B
202 210anti-parallel
Strand 3
B
119 126anti-parallel
Strand 4
B
170 174anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 101first strand
Strand 2
B
234 236anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 72first strand
Strand 2
C
212 221anti-parallel
Strand 3
C
113 119anti-parallel
Strand 4
C
162 167anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
108 110first strand
Strand 2
C
226 228anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
151 156first strand
Strand 2
C
128 134anti-parallel
Strand 3
C
194 199anti-parallel
Strand 4
C
80 85anti-parallel
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