Analysis of interatomic Contacts of Structural Units in PDB entry:
6T5M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6T5M entry

There are 4 chains in PDB entry 6T5M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 SER 5PHE 292
A
 LEU 6PHE 292
D
 LEU 6PHE 292
B
 LEU 6PHE 292
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 6T5M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
7 19Right-handed alpha
Helix 2
AA2
C
29 40Right-handed alpha
Helix 3
AA3
C
47 54Right-handed alpha
Helix 4
AA4
C
65 80Right-handed alpha
Helix 5
AA5
C
95 110Right-handed alpha
Helix 6
AA6
C
135 150Right-handed alpha
Helix 7
AA7
C
162 168Right-handed alpha
Helix 8
AA8
C
168 182Right-handed alpha
Helix 9
AA9
C
194 206Right-handed alpha
Helix 10
AB1
C
223 230Right-handed alpha
Helix 11
AB2
C
239 260Right-handed alpha
Helix 12
AB3
C
262 269Right-handed 310
Helix 13
AB4
C
271 279Right-handed alpha
Helix 14
AB5
C
281 292Right-handed alpha
Helix 15
AB6
A
7 19Right-handed alpha
Helix 16
AB7
A
29 40Right-handed alpha
Helix 17
AB8
A
47 56Right-handed alpha
Helix 18
AB9
A
65 80Right-handed alpha
Helix 19
AC1
A
95 110Right-handed alpha
Helix 20
AC2
A
135 150Right-handed alpha
Helix 21
AC3
A
163 168Right-handed alpha
Helix 22
AC4
A
168 182Right-handed alpha
Helix 23
AC5
A
194 206Right-handed alpha
Helix 24
AC6
A
223 230Right-handed alpha
Helix 25
AC7
A
239 260Right-handed alpha
Helix 26
AC8
A
262 269Right-handed 310
Helix 27
AC9
A
271 279Right-handed alpha
Helix 28
AD1
A
281 292Right-handed alpha
Helix 29
AD2
D
7 19Right-handed alpha
Helix 30
AD3
D
29 39Right-handed alpha
Helix 31
AD4
D
47 54Right-handed alpha
Helix 32
AD5
D
65 80Right-handed alpha
Helix 33
AD6
D
95 110Right-handed alpha
Helix 34
AD7
D
135 150Right-handed alpha
Helix 35
AD8
D
163 168Right-handed alpha
Helix 36
AD9
D
168 182Right-handed alpha
Helix 37
AE1
D
194 206Right-handed alpha
Helix 38
AE2
D
223 230Right-handed alpha
Helix 39
AE3
D
239 260Right-handed alpha
Helix 40
AE4
D
262 269Right-handed 310
Helix 41
AE5
D
271 279Right-handed alpha
Helix 42
AE6
D
281 292Right-handed alpha
Helix 43
AE7
B
7 19Right-handed alpha
Helix 44
AE8
B
29 39Right-handed alpha
Helix 45
AE9
B
47 54Right-handed alpha
Helix 46
AF1
B
65 80Right-handed alpha
Helix 47
AF2
B
95 110Right-handed alpha
Helix 48
AF3
B
135 150Right-handed alpha
Helix 49
AF4
B
162 183Right-handed alpha
Helix 50
AF5
B
194 206Right-handed alpha
Helix 51
AF6
B
223 230Right-handed alpha
Helix 52
AF7
B
239 260Right-handed alpha
Helix 53
AF8
B
262 269Right-handed 310
Helix 54
AF9
B
271 279Right-handed alpha
Helix 55
AG1
B
280 283Right-handed 310
Helix 56
AG2
B
284 292Right-handed alpha
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There are 4 sheets in PDB entry 6T5M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
186 189first strand
Strand 2
C
156 161parallel
Strand 3
C
113 117parallel
Strand 4
C
84 87parallel
Strand 5
C
44 46parallel
Strand 6
C
22 26parallel
Strand 7
C
234 237parallel
Strand 8
C
210 212parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 189first strand
Strand 2
A
156 161parallel
Strand 3
A
113 117parallel
Strand 4
A
84 87parallel
Strand 5
A
44 46parallel
Strand 6
A
22 26parallel
Strand 7
A
234 237parallel
Strand 8
A
210 212parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
186 189first strand
Strand 2
D
156 161parallel
Strand 3
D
113 117parallel
Strand 4
D
84 87parallel
Strand 5
D
44 46parallel
Strand 6
D
22 26parallel
Strand 7
D
234 237parallel
Strand 8
D
210 212parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 189first strand
Strand 2
B
156 161parallel
Strand 3
B
113 117parallel
Strand 4
B
84 87parallel
Strand 5
B
43 46parallel
Strand 6
B
22 26parallel
Strand 7
B
234 237parallel
Strand 8
B
210 212parallel
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