Analysis of interatomic Contacts of Structural Units in PDB entry:
6T6L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6T6L entry

There are 3 chains in PDB entry 6T6L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 365LEU 570
B
 GLY 365LEU 570
C
 LEU 366LEU 570
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6T6L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
367 379Right-handed alpha
Helix 2
AA2
A
420 431Right-handed alpha
Helix 3
AA3
A
435 440Right-handed 310
Helix 4
AA4
A
445 454Right-handed alpha
Helix 5
AA5
A
465 475Right-handed alpha
Helix 6
AA6
A
488 493Right-handed alpha
Helix 7
AA7
A
495 504Right-handed alpha
Helix 8
AA8
A
505 507Right-handed 310
Helix 9
AA9
A
530 544Right-handed alpha
Helix 10
AB1
A
556 561Right-handed alpha
Helix 11
AB2
B
367 379Right-handed alpha
Helix 12
AB3
B
420 431Right-handed alpha
Helix 13
AB4
B
435 440Right-handed 310
Helix 14
AB5
B
445 454Right-handed alpha
Helix 15
AB6
B
465 475Right-handed alpha
Helix 16
AB7
B
488 493Right-handed alpha
Helix 17
AB8
B
495 504Right-handed alpha
Helix 18
AB9
B
505 507Right-handed 310
Helix 19
AC1
B
530 544Right-handed alpha
Helix 20
AC2
B
556 561Right-handed alpha
Helix 21
AC3
C
369 379Right-handed alpha
Helix 22
AC4
C
420 429Right-handed alpha
Helix 23
AC5
C
435 440Right-handed 310
Helix 24
AC6
C
445 454Right-handed alpha
Helix 25
AC7
C
465 475Right-handed alpha
Helix 26
AC8
C
488 493Right-handed alpha
Helix 27
AC9
C
495 504Right-handed alpha
Helix 28
AD1
C
505 507Right-handed 310
Helix 29
AD2
C
530 544Right-handed alpha
Helix 30
AD3
C
556 561Right-handed alpha
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There are 8 sheets in PDB entry 6T6L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
481 484first strand
Strand 2
A
459 462parallel
Strand 3
A
387 392parallel
Strand 4
A
400 404anti-parallel
Strand 5
A
410 415anti-parallel
Strand 6
A
552 553parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
514 517first strand
Strand 2
A
523 526anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
388 394first strand
Strand 2
B
397 404anti-parallel
Strand 3
B
410 415anti-parallel
Strand 4
B
552 553parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
459 462first strand
Strand 2
B
481 484parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
514 517first strand
Strand 2
B
523 526anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
388 394first strand
Strand 2
C
397 404anti-parallel
Strand 3
C
410 415anti-parallel
Strand 4
C
552 553parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
459 462first strand
Strand 2
C
481 484parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
514 517first strand
Strand 2
C
523 526anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il