Analysis of interatomic Contacts of Structural Units in PDB entry:
6T85


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6T85 entry

There is 1 chain in PDB entry 6T85 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0HIS 587
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6T85. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
141 154Right-handed alpha
Helix 2
AA2
A
168 174Right-handed alpha
Helix 3
AA3
A
183 190Right-handed alpha
Helix 4
AA4
A
194 206Right-handed alpha
Helix 5
AA5
A
211 232Right-handed alpha
Helix 6
AA6
A
256 260Right-handed 310
Helix 7
AA7
A
261 276Right-handed alpha
Helix 8
AA8
A
326 334Right-handed alpha
Helix 9
AA9
A
351 360Right-handed alpha
Helix 10
AB1
A
384 393Right-handed 310
Helix 11
AB2
A
410 420Right-handed alpha
Helix 12
AB3
A
421 425Right-handed 310
Helix 13
AB4
A
432 439Right-handed alpha
Helix 14
AB5
A
439 444Right-handed alpha
Helix 15
AB6
A
444 454Right-handed alpha
Helix 16
AB7
A
462 470Right-handed alpha
Helix 17
AB8
A
473 491Right-handed alpha
Helix 18
AB9
A
563 583Right-handed alpha
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There are 6 sheets in PDB entry 6T85. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 280first strand
Strand 2
A
158 161parallel
Strand 3
A
130 138parallel
Strand 4
A
306 318parallel
Strand 5
A
296 303anti-parallel
Strand 6
A
284 290anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 280first strand
Strand 2
A
158 161parallel
Strand 3
A
130 138parallel
Strand 4
A
306 318parallel
Strand 5
A
541 547parallel
Strand 6
A
533 535anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
A
253 254anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 365first strand
Strand 2
A
525 526anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 376first strand
Strand 2
A
510 522anti-parallel
Strand 3
A
426 431anti-parallel
Strand 4
A
395 397anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 376first strand
Strand 2
A
510 522anti-parallel
Strand 3
A
457 460anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il