Analysis of interatomic Contacts of Structural Units in PDB entry:
6T8B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6T8B entry

There are 8 chains in PDB entry 6T8B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 314	LEU 721
B	THR 314	ILE 720
C	THR 314	LEU 721
D	LEU 315	LEU 721
E	LEU 315	LEU 721
F	THR 314	LEU 721
G	A 1	T 20
H	A 1	T 20

There are 92 helices in PDB entry 6T8B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	317	321	Right-handed 310
Helix 2	AA2	A	332	350	Right-handed alpha
Helix 3	AA3	A	377	392	Right-handed alpha
Helix 4	AA4	A	423	428	Right-handed alpha
Helix 5	AA5	A	429	435	Right-handed alpha
Helix 6	AA6	A	457	459	Right-handed 310
Helix 7	AA7	A	471	485	Right-handed alpha
Helix 8	AA8	A	523	544	Right-handed alpha
Helix 9	AA9	A	549	563	Right-handed alpha
Helix 10	AB1	A	599	604	Right-handed alpha
Helix 11	AB2	A	605	619	Right-handed alpha
Helix 12	AB3	A	639	644	Right-handed alpha
Helix 13	AB4	A	657	665	Right-handed alpha
Helix 14	AB5	A	697	710	Right-handed alpha
Helix 15	AB6	B	317	321	Right-handed 310
Helix 16	AB7	B	332	350	Right-handed alpha
Helix 17	AB8	B	378	383	Right-handed alpha
Helix 18	AB9	B	386	392	Right-handed alpha
Helix 19	AC1	B	423	428	Right-handed alpha
Helix 20	AC2	B	429	435	Right-handed alpha
Helix 21	AC3	B	473	485	Right-handed alpha
Helix 22	AC4	B	503	507	Right-handed 310
Helix 23	AC5	B	523	544	Right-handed alpha
Helix 24	AC6	B	549	563	Right-handed alpha
Helix 25	AC7	B	596	604	Right-handed alpha
Helix 26	AC8	B	605	618	Right-handed alpha
Helix 27	AC9	B	659	664	Right-handed alpha
Helix 28	AD1	B	697	712	Right-handed alpha
Helix 29	AD2	C	317	321	Right-handed 310
Helix 30	AD3	C	332	350	Right-handed alpha
Helix 31	AD4	C	377	383	Right-handed alpha
Helix 32	AD5	C	384	392	Right-handed alpha
Helix 33	AD6	C	423	428	Right-handed alpha
Helix 34	AD7	C	429	435	Right-handed alpha
Helix 35	AD8	C	457	459	Right-handed 310
Helix 36	AD9	C	476	485	Right-handed alpha
Helix 37	AE1	C	520	544	Right-handed alpha
Helix 38	AE2	C	549	563	Right-handed alpha
Helix 39	AE3	C	596	619	Right-handed alpha
Helix 40	AE4	C	639	644	Right-handed alpha
Helix 41	AE5	C	657	664	Right-handed alpha
Helix 42	AE6	C	697	710	Right-handed alpha
Helix 43	AE7	C	717	721	Right-handed 310
Helix 44	AE8	D	317	321	Right-handed 310
Helix 45	AE9	D	332	348	Right-handed alpha
Helix 46	AF1	D	377	392	Right-handed alpha
Helix 47	AF2	D	422	428	Right-handed alpha
Helix 48	AF3	D	429	434	Right-handed alpha
Helix 49	AF4	D	457	459	Right-handed 310
Helix 50	AF5	D	471	485	Right-handed alpha
Helix 51	AF6	D	521	546	Right-handed alpha
Helix 52	AF7	D	549	563	Right-handed alpha
Helix 53	AF8	D	596	601	Right-handed alpha
Helix 54	AF9	D	607	616	Right-handed alpha
Helix 55	AG1	D	639	645	Right-handed alpha
Helix 56	AG2	D	657	664	Right-handed alpha
Helix 57	AG3	D	697	710	Right-handed alpha
Helix 58	AG4	D	717	721	Right-handed 310
Helix 59	AG5	E	332	350	Right-handed alpha
Helix 60	AG6	E	377	384	Right-handed alpha
Helix 61	AG7	E	384	392	Right-handed alpha
Helix 62	AG8	E	422	428	Right-handed alpha
Helix 63	AG9	E	429	435	Right-handed alpha
Helix 64	AH1	E	457	459	Right-handed 310
Helix 65	AH2	E	471	486	Right-handed alpha
Helix 66	AH3	E	523	544	Right-handed alpha
Helix 67	AH4	E	549	560	Right-handed alpha
Helix 68	AH5	E	596	605	Right-handed alpha
Helix 69	AH6	E	605	610	Right-handed alpha
Helix 70	AH7	E	611	616	Right-handed alpha
Helix 71	AH8	E	617	622	Right-handed 310
Helix 72	AH9	E	639	644	Right-handed alpha
Helix 73	AI1	E	656	664	Right-handed alpha
Helix 74	AI2	E	697	712	Right-handed alpha
Helix 75	AI3	E	717	721	Right-handed 310
Helix 76	AI4	F	317	321	Right-handed 310
Helix 77	AI5	F	325	329	Right-handed 310
Helix 78	AI6	F	332	349	Right-handed alpha
Helix 79	AI7	F	378	383	Right-handed alpha
Helix 80	AI8	F	386	391	Right-handed alpha
Helix 81	AI9	F	422	428	Right-handed alpha
Helix 82	AJ1	F	429	434	Right-handed alpha
Helix 83	AJ2	F	471	485	Right-handed alpha
Helix 84	AJ3	F	504	508	Right-handed 310
Helix 85	AJ4	F	520	544	Right-handed alpha
Helix 86	AJ5	F	549	563	Right-handed alpha
Helix 87	AJ6	F	596	605	Right-handed alpha
Helix 88	AJ7	F	608	618	Right-handed alpha
Helix 89	AJ8	F	639	644	Right-handed alpha
Helix 90	AJ9	F	658	665	Right-handed alpha
Helix 91	AK1	F	697	710	Right-handed alpha
Helix 92	AK2	F	717	721	Right-handed 310

There are 17 sheets in PDB entry 6T8B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	361	first strand
Strand 2	A	365	372	anti-parallel
Strand 3	A	409	414	anti-parallel
Strand 4	A	398	399	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	455	first strand
Strand 2	A	440	446	anti-parallel
Strand 3	A	689	693	anti-parallel
Strand 4	A	677	681	anti-parallel
Strand 5	A	649	651	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	461	462	first strand
Strand 2	A	625	628	parallel
Strand 3	A	591	594	parallel
Strand 4	A	495	497	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	360	first strand
Strand 2	B	365	372	anti-parallel
Strand 3	B	409	414	anti-parallel
Strand 4	B	398	400	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	445	first strand
Strand 2	B	451	455	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	492	497	first strand
Strand 2	B	589	594	parallel
Strand 3	B	624	630	parallel
Strand 4	B	462	465	parallel
Strand 5	B	648	652	parallel
Strand 6	B	678	681	anti-parallel
Strand 7	B	689	691	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	361	first strand
Strand 2	C	365	372	anti-parallel
Strand 3	C	410	414	anti-parallel
Strand 4	C	399	400	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	455	first strand
Strand 2	C	440	446	anti-parallel
Strand 3	C	691	693	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	495	497	first strand
Strand 2	C	590	595	parallel
Strand 3	C	624	629	parallel
Strand 4	C	462	466	parallel
Strand 5	C	648	652	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	356	361	first strand
Strand 2	D	365	370	anti-parallel
Strand 3	D	410	414	anti-parallel
Strand 4	D	398	400	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	451	455	first strand
Strand 2	D	440	446	anti-parallel
Strand 3	D	689	692	anti-parallel
Strand 4	D	677	681	anti-parallel
Strand 5	D	649	652	anti-parallel
Strand 6	D	462	465	parallel
Strand 7	D	624	628	parallel
Strand 8	D	589	594	parallel
Strand 9	D	492	496	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	354	360	first strand
Strand 2	E	365	372	anti-parallel
Strand 3	E	409	414	anti-parallel
Strand 4	E	398	400	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	451	455	first strand
Strand 2	E	440	446	anti-parallel
Strand 3	E	689	692	anti-parallel
Strand 4	E	677	680	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	494	497	first strand
Strand 2	E	590	594	parallel
Strand 3	E	624	626	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	354	358	first strand
Strand 2	F	365	372	anti-parallel
Strand 3	F	409	414	anti-parallel
Strand 4	F	398	400	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	451	455	first strand
Strand 2	F	440	445	anti-parallel
Strand 3	F	689	693	anti-parallel
Strand 4	F	677	680	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	493	497	first strand
Strand 2	F	590	594	parallel
Strand 3	F	625	628	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6T8B

Analysis of interatomic Contacts of Structural Units in PDB entry:
6T8B