Analysis of interatomic Contacts of Structural Units in PDB entry:
6T8D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6T8D entry

There is 1 chain in PDB entry 6T8D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 ALA 0GLN 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6T8D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
X
5 33Right-handed alpha
Helix 2
AA2
X
42 64Right-handed alpha
Helix 3
AA3
X
65 89Right-handed alpha
Helix 4
AA4
X
96 149Right-handed alpha
Helix 5
AA5
X
150 152Right-handed 310
Helix 6
AA6
X
153 173Right-handed alpha
Helix 7
AA7
X
179 185Right-handed alpha
Helix 8
AA8
X
223 229Right-handed alpha
Helix 9
AA9
X
231 245Right-handed alpha
Helix 10
AB1
X
246 248Right-handed 310
Helix 11
AB2
X
249 274Right-handed alpha
Helix 12
AB3
X
278 303Right-handed alpha
Helix 13
AB4
X
305 308Right-handed 310
Helix 14
AB5
X
309 314Right-handed alpha
Helix 15
AB6
X
314 333Right-handed alpha
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There are 2 sheets in PDB entry 6T8D. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
34 35first strand
Strand 2
X
206 219anti-parallel
Strand 3
X
190 202anti-parallel
Strand 4
X
337 338parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
34 35first strand
Strand 2
X
206 219anti-parallel
Strand 3
X
190 202anti-parallel
Strand 4
X
342 345parallel
Strand 5
X
349 352anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il