Analysis of interatomic Contacts of Structural Units in PDB entry:
6T8K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6T8K entry

There are 2 chains in PDB entry 6T8K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 46	LEU 476
B	ALA 48	LEU 476

There are 33 helices in PDB entry 6T8K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	92	104	Right-handed alpha
Helix 2	AA2	A	111	113	Right-handed 310
Helix 3	AA3	A	119	122	Right-handed 310
Helix 4	AA4	A	167	171	Right-handed alpha
Helix 5	AA5	A	205	212	Right-handed 310
Helix 6	AA6	A	245	254	Right-handed alpha
Helix 7	AA7	A	254	259	Right-handed alpha
Helix 8	AA8	A	259	265	Right-handed alpha
Helix 9	AA9	A	286	304	Right-handed alpha
Helix 10	AB1	A	330	345	Right-handed alpha
Helix 11	AB2	A	370	372	Right-handed 310
Helix 12	AB3	A	391	394	Right-handed 310
Helix 13	AB4	A	411	421	Right-handed alpha
Helix 14	AB5	A	432	434	Right-handed 310
Helix 15	AB6	A	435	442	Right-handed alpha
Helix 16	AB7	A	445	452	Right-handed alpha
Helix 17	AB8	B	92	104	Right-handed alpha
Helix 18	AB9	B	111	113	Right-handed 310
Helix 19	AC1	B	119	122	Right-handed 310
Helix 20	AC2	B	127	129	Right-handed 310
Helix 21	AC3	B	167	171	Right-handed alpha
Helix 22	AC4	B	205	212	Right-handed 310
Helix 23	AC5	B	245	254	Right-handed alpha
Helix 24	AC6	B	254	259	Right-handed alpha
Helix 25	AC7	B	259	265	Right-handed alpha
Helix 26	AC8	B	286	304	Right-handed alpha
Helix 27	AC9	B	330	345	Right-handed alpha
Helix 28	AD1	B	370	372	Right-handed 310
Helix 29	AD2	B	391	394	Right-handed 310
Helix 30	AD3	B	411	421	Right-handed alpha
Helix 31	AD4	B	432	434	Right-handed 310
Helix 32	AD5	B	435	442	Right-handed alpha
Helix 33	AD6	B	445	452	Right-handed alpha

There are 16 sheets in PDB entry 6T8K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	117	first strand
Strand 2	A	131	139	anti-parallel
Strand 3	A	124	126	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	117	first strand
Strand 2	A	131	139	anti-parallel
Strand 3	A	68	77	anti-parallel
Strand 4	A	47	52	anti-parallel
Strand 5	A	164	165	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	64	first strand
Strand 2	A	172	179	parallel
Strand 3	A	149	157	anti-parallel
Strand 4	A	88	91	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	64	first strand
Strand 2	A	172	179	parallel
Strand 3	A	149	157	anti-parallel
Strand 4	A	108	109	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	243	first strand
Strand 2	A	223	234	anti-parallel
Strand 3	A	268	274	parallel
Strand 4	A	308	312	parallel
Strand 5	A	349	354	parallel
Strand 6	A	375	378	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	243	first strand
Strand 2	A	223	234	anti-parallel
Strand 3	A	194	200	parallel
Strand 4	A	425	429	parallel
Strand 5	A	396	401	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	364	first strand
Strand 2	A	367	368	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	460	461	first strand
Strand 2	A	470	471	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	52	first strand
Strand 2	B	68	76	anti-parallel
Strand 3	B	131	139	anti-parallel
Strand 4	B	115	117	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	52	first strand
Strand 2	B	68	76	anti-parallel
Strand 3	B	131	139	anti-parallel
Strand 4	B	124	126	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	64	first strand
Strand 2	B	172	179	parallel
Strand 3	B	149	157	anti-parallel
Strand 4	B	88	91	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	64	first strand
Strand 2	B	172	179	parallel
Strand 3	B	149	157	anti-parallel
Strand 4	B	108	109	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	243	first strand
Strand 2	B	223	234	anti-parallel
Strand 3	B	268	274	parallel
Strand 4	B	308	312	parallel
Strand 5	B	349	354	parallel
Strand 6	B	375	378	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	243	first strand
Strand 2	B	223	234	anti-parallel
Strand 3	B	194	200	parallel
Strand 4	B	425	429	parallel
Strand 5	B	396	401	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	364	first strand
Strand 2	B	367	368	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	460	461	first strand
Strand 2	B	470	471	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6T8K

Analysis of interatomic Contacts of Structural Units in PDB entry:
6T8K