Analysis of interatomic Contacts of Structural Units in PDB entry:
6T8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6T8M entry

There are 3 chains in PDB entry 6T8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 58TYR 284
B
 SER 58TYR 284
C
 SER 58TYR 284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6T8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 73Right-handed alpha
Helix 2
AA2
A
84 101Right-handed alpha
Helix 3
AA3
A
146 167Right-handed alpha
Helix 4
AA4
B
63 74Right-handed alpha
Helix 5
AA5
B
84 101Right-handed alpha
Helix 6
AA6
B
117 121Right-handed 310
Helix 7
AA7
B
146 167Right-handed alpha
Helix 8
AA8
C
63 74Right-handed alpha
Helix 9
AA9
C
84 101Right-handed alpha
Helix 10
AB1
C
117 121Right-handed 310
Helix 11
AB2
C
146 167Right-handed alpha
Helix 12
AB3
C
218 222Right-handed 310
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There are 6 sheets in PDB entry 6T8M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 78first strand
Strand 2
A
255 260anti-parallel
Strand 3
A
207 212anti-parallel
Strand 4
A
276 283anti-parallel
Strand 5
A
175 182anti-parallel
Strand 6
A
125 129anti-parallel
Strand 7
A
105 106anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 191first strand
Strand 2
A
266 268anti-parallel
Strand 3
A
225 228anti-parallel
Strand 4
A
246 249anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 78first strand
Strand 2
B
256 260anti-parallel
Strand 3
B
207 212anti-parallel
Strand 4
B
276 283anti-parallel
Strand 5
B
175 182anti-parallel
Strand 6
B
125 129anti-parallel
Strand 7
B
105 106anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 191first strand
Strand 2
B
266 268anti-parallel
Strand 3
B
225 228anti-parallel
Strand 4
B
246 249anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
75 78first strand
Strand 2
C
256 260anti-parallel
Strand 3
C
207 212anti-parallel
Strand 4
C
276 283anti-parallel
Strand 5
C
175 182anti-parallel
Strand 6
C
124 129anti-parallel
Strand 7
C
105 106anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
188 191first strand
Strand 2
C
266 268anti-parallel
Strand 3
C
225 228anti-parallel
Strand 4
C
246 249anti-parallel
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