Analysis of interatomic Contacts of Structural Units in PDB entry:
6T98


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6T98 entry

There is 1 chain in PDB entry 6T98 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 0SER 488
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6T98. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 27Right-handed alpha
Helix 2
AA2
A
49 56Right-handed alpha
Helix 3
AA3
A
56 77Right-handed alpha
Helix 4
AA4
A
78 80Right-handed 310
Helix 5
AA5
A
91 117Right-handed alpha
Helix 6
AA6
A
171 175Right-handed 310
Helix 7
AA7
A
178 182Right-handed alpha
Helix 8
AA8
A
197 210Right-handed alpha
Helix 9
AA9
A
231 245Right-handed alpha
Helix 10
AB1
A
304 308Right-handed 310
Helix 11
AB2
A
326 329Right-handed 310
Helix 12
AB3
A
334 350Right-handed alpha
Helix 13
AB4
A
378 386Right-handed alpha
Helix 14
AB5
A
400 405Right-handed alpha
Helix 15
AB6
A
433 447Right-handed alpha
Helix 16
AB7
A
450 455Right-handed alpha
Helix 17
AB8
A
464 469Right-handed 310
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There are 6 sheets in PDB entry 6T98. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 124first strand
Strand 2
A
31 35parallel
Strand 3
A
5 10parallel
Strand 4
A
147 158parallel
Strand 5
A
134 138anti-parallel
Strand 6
A
126 131anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 124first strand
Strand 2
A
31 35parallel
Strand 3
A
5 10parallel
Strand 4
A
147 158parallel
Strand 5
A
322 324parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 164first strand
Strand 2
A
287 289anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 177first strand
Strand 2
A
280 283parallel
Strand 3
A
190 194parallel
Strand 4
A
216 220parallel
Strand 5
A
248 250parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 259first strand
Strand 2
A
266 270anti-parallel
Strand 3
A
275 278anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 366first strand
Strand 2
A
372 376anti-parallel
Strand 3
A
424 430anti-parallel
Strand 4
A
411 418anti-parallel
Strand 5
A
388 396anti-parallel
Strand 6
A
476 479anti-parallel
Strand 7
A
482 484anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il