Analysis of interatomic Contacts of Structural Units in PDB entry:
6T9J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6T9J entry

There are 3 chains in PDB entry 6T9J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASN 389LYS 488
I
 ALA 353ARG 413
T
 MET 1PHE 3744
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are188 helices in PDB entry 6T9J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
403 413Right-handed alpha
Helix 2
AA2
B
475 488Right-handed alpha
Helix 3
AA3
T
3 10Right-handed 310
Helix 4
AA4
T
27 31Right-handed 310
Helix 5
AA5
T
44 61Right-handed alpha
Helix 6
AA6
T
72 86Right-handed alpha
Helix 7
AA7
T
91 97Right-handed alpha
Helix 8
AA8
T
99 104Right-handed alpha
Helix 9
AA9
T
117 132Right-handed alpha
Helix 10
AB1
T
141 157Right-handed alpha
Helix 11
AB2
T
231 240Right-handed alpha
Helix 12
AB3
T
250 254Right-handed 310
Helix 13
AB4
T
293 309Right-handed alpha
Helix 14
AB5
T
310 314Right-handed 310
Helix 15
AB6
T
324 335Right-handed alpha
Helix 16
AB7
T
341 356Right-handed alpha
Helix 17
AB8
T
363 369Right-handed alpha
Helix 18
AB9
T
374 378Right-handed 310
Helix 19
AC1
T
387 403Right-handed alpha
Helix 20
AC2
T
407 424Right-handed alpha
Helix 21
AC3
T
428 453Right-handed alpha
Helix 22
AC4
T
456 480Right-handed alpha
Helix 23
AC5
T
481 498Right-handed alpha
Helix 24
AC6
T
512 520Right-handed alpha
Helix 25
AC7
T
561 567Right-handed 310
Helix 26
AC8
T
578 601Right-handed alpha
Helix 27
AC9
T
602 605Right-handed 310
Helix 28
AD1
T
627 644Right-handed alpha
Helix 29
AD2
T
645 647Right-handed 310
Helix 30
AD3
T
676 690Right-handed alpha
Helix 31
AD4
T
694 714Right-handed alpha
Helix 32
AD5
T
716 718Right-handed 310
Helix 33
AD6
T
719 728Right-handed alpha
Helix 34
AD7
T
732 748Right-handed alpha
Helix 35
AD8
T
749 751Right-handed 310
Helix 36
AD9
T
755 776Right-handed alpha
Helix 37
AE1
T
788 799Right-handed alpha
Helix 38
AE2
T
806 819Right-handed alpha
Helix 39
AE3
T
827 830Right-handed 310
Helix 40
AE4
T
831 844Right-handed alpha
Helix 41
AE5
T
853 863Right-handed alpha
Helix 42
AE6
T
879 889Right-handed alpha
Helix 43
AE7
T
893 907Right-handed alpha
Helix 44
AE8
T
917 919Right-handed 310
Helix 45
AE9
T
920 929Right-handed alpha
Helix 46
AF1
T
930 932Right-handed 310
Helix 47
AF2
T
942 952Right-handed alpha
Helix 48
AF3
T
996 1006Right-handed alpha
Helix 49
AF4
T
1010 1031Right-handed alpha
Helix 50
AF5
T
1038 1049Right-handed alpha
Helix 51
AF6
T
1068 1089Right-handed alpha
Helix 52
AF7
T
1090 1092Right-handed 310
Helix 53
AF8
T
1095 1121Right-handed alpha
Helix 54
AF9
T
1122 1124Right-handed 310
Helix 55
AG1
T
1148 1154Right-handed alpha
Helix 56
AG2
T
1157 1180Right-handed alpha
Helix 57
AG3
T
1180 1185Right-handed alpha
Helix 58
AG4
T
1188 1201Right-handed alpha
Helix 59
AG5
T
1205 1223Right-handed alpha
Helix 60
AG6
T
1228 1233Right-handed alpha
Helix 61
AG7
T
1233 1247Right-handed alpha
Helix 62
AG8
T
1254 1272Right-handed alpha
Helix 63
AG9
T
1283 1294Right-handed alpha
Helix 64
AH1
T
1300 1313Right-handed alpha
Helix 65
AH2
T
1321 1326Right-handed alpha
Helix 66
AH3
T
1329 1340Right-handed alpha
Helix 67
AH4
T
1346 1363Right-handed alpha
Helix 68
AH5
T
1371 1383Right-handed alpha
Helix 69
AH6
T
1404 1424Right-handed alpha
Helix 70
AH7
T
1436 1447Right-handed alpha
Helix 71
AH8
T
1452 1467Right-handed alpha
Helix 72
AH9
T
1468 1470Right-handed 310
Helix 73
AI1
T
1477 1482Right-handed alpha
Helix 74
AI2
T
1482 1489Right-handed alpha
Helix 75
AI3
T
1496 1508Right-handed alpha
Helix 76
AI4
T
1517 1528Right-handed alpha
Helix 77
AI5
T
1532 1538Right-handed alpha
Helix 78
AI6
T
1546 1558Right-handed alpha
Helix 79
AI7
T
1570 1584Right-handed alpha
Helix 80
AI8
T
1593 1604Right-handed alpha
Helix 81
AI9
T
1605 1613Right-handed alpha
Helix 82
AJ1
T
1617 1629Right-handed alpha
Helix 83
AJ2
T
1633 1642Right-handed alpha
Helix 84
AJ3
T
1643 1659Right-handed alpha
Helix 85
AJ4
T
1661 1679Right-handed alpha
Helix 86
AJ5
T
1690 1709Right-handed alpha
Helix 87
AJ6
T
1715 1734Right-handed alpha
Helix 88
AJ7
T
1739 1750Right-handed alpha
Helix 89
AJ8
T
1762 1770Right-handed alpha
Helix 90
AJ9
T
1771 1775Right-handed 310
Helix 91
AK1
T
1777 1792Right-handed alpha
Helix 92
AK2
T
1796 1817Right-handed alpha
Helix 93
AK3
T
1833 1843Right-handed alpha
Helix 94
AK4
T
1844 1845Right-handed 310
Helix 95
AK5
T
1846 1850Right-handed 310
Helix 96
AK6
T
1858 1875Right-handed alpha
Helix 97
AK7
T
1882 1893Right-handed alpha
Helix 98
AK8
T
1899 1916Right-handed alpha
Helix 99
AK9
T
1920 1931Right-handed alpha
Helix 100
AL1
T
1935 1937Right-handed 310
Helix 101
AL2
T
1938 1958Right-handed alpha
Helix 102
AL3
T
1964 1977Right-handed alpha
Helix 103
AL4
T
1982 1988Right-handed alpha
Helix 104
AL5
T
2001 2015Right-handed alpha
Helix 105
AL6
T
2024 2043Right-handed alpha
Helix 106
AL7
T
2090 2107Right-handed alpha
Helix 107
AL8
T
2116 2129Right-handed alpha
Helix 108
AL9
T
2155 2173Right-handed alpha
Helix 109
AM1
T
2183 2196Right-handed alpha
Helix 110
AM2
T
2203 2217Right-handed alpha
Helix 111
AM3
T
2228 2245Right-handed alpha
Helix 112
AM4
T
2251 2267Right-handed alpha
Helix 113
AM5
T
2275 2290Right-handed alpha
Helix 114
AM6
T
2302 2321Right-handed alpha
Helix 115
AM7
T
2328 2342Right-handed alpha
Helix 116
AM8
T
2345 2361Right-handed alpha
Helix 117
AM9
T
2369 2378Right-handed alpha
Helix 118
AN1
T
2381 2386Right-handed alpha
Helix 119
AN2
T
2387 2402Right-handed alpha
Helix 120
AN3
T
2417 2424Right-handed alpha
Helix 121
AN4
T
2428 2443Right-handed alpha
Helix 122
AN5
T
2446 2456Right-handed alpha
Helix 123
AN6
T
2468 2477Right-handed alpha
Helix 124
AN7
T
2478 2480Right-handed 310
Helix 125
AN8
T
2499 2503Right-handed 310
Helix 126
AN9
T
2518 2534Right-handed alpha
Helix 127
AO1
T
2537 2550Right-handed alpha
Helix 128
AO2
T
2553 2568Right-handed alpha
Helix 129
AO3
T
2569 2571Right-handed 310
Helix 130
AO4
T
2575 2588Right-handed alpha
Helix 131
AO5
T
2589 2596Right-handed 310
Helix 132
AO6
T
2601 2611Right-handed alpha
Helix 133
AO7
T
2622 2627Right-handed alpha
Helix 134
AO8
T
2632 2645Right-handed alpha
Helix 135
AO9
T
2654 2669Right-handed alpha
Helix 136
AP1
T
2671 2683Right-handed alpha
Helix 137
AP2
T
2685 2698Right-handed alpha
Helix 138
AP3
T
2699 2716Right-handed alpha
Helix 139
AP4
T
2724 2740Right-handed alpha
Helix 140
AP5
T
2742 2753Right-handed alpha
Helix 141
AP6
T
2772 2784Right-handed alpha
Helix 142
AP7
T
2788 2806Right-handed alpha
Helix 143
AP8
T
2812 2831Right-handed alpha
Helix 144
AP9
T
2838 2864Right-handed alpha
Helix 145
AQ1
T
2865 2868Right-handed 310
Helix 146
AQ2
T
2873 2886Right-handed alpha
Helix 147
AQ3
T
2894 2916Right-handed alpha
Helix 148
AQ4
T
2920 2924Right-handed 310
Helix 149
AQ5
T
2942 2957Right-handed alpha
Helix 150
AQ6
T
2959 2966Right-handed alpha
Helix 151
AQ7
T
2979 2992Right-handed alpha
Helix 152
AQ8
T
2998 3007Right-handed alpha
Helix 153
AQ9
T
3017 3033Right-handed alpha
Helix 154
AR1
T
3036 3048Right-handed alpha
Helix 155
AR2
T
3053 3069Right-handed alpha
Helix 156
AR3
T
3077 3091Right-handed alpha
Helix 157
AR4
T
3097 3109Right-handed alpha
Helix 158
AR5
T
3115 3123Right-handed alpha
Helix 159
AR6
T
3130 3135Right-handed 310
Helix 160
AR7
T
3136 3142Right-handed alpha
Helix 161
AR8
T
3151 3163Right-handed alpha
Helix 162
AR9
T
3163 3180Right-handed alpha
Helix 163
AS1
T
3203 3218Right-handed alpha
Helix 164
AS2
T
3219 3237Right-handed alpha
Helix 165
AS3
T
3240 3260Right-handed alpha
Helix 166
AS4
T
3273 3286Right-handed alpha
Helix 167
AS5
T
3292 3297Right-handed alpha
Helix 168
AS6
T
3298 3300Right-handed 310
Helix 169
AS7
T
3308 3327Right-handed alpha
Helix 170
AS8
T
3333 3338Right-handed alpha
Helix 171
AS9
T
3338 3343Right-handed alpha
Helix 172
AT1
T
3343 3348Right-handed alpha
Helix 173
AT2
T
3412 3426Right-handed alpha
Helix 174
AT3
T
3428 3433Right-handed alpha
Helix 175
AT4
T
3433 3439Right-handed alpha
Helix 176
AT5
T
3467 3478Right-handed alpha
Helix 177
AT6
T
3482 3495Right-handed alpha
Helix 178
AT7
T
3505 3521Right-handed alpha
Helix 179
AT8
T
3525 3535Right-handed alpha
Helix 180
AT9
T
3537 3561Right-handed alpha
Helix 181
AU1
T
3562 3564Right-handed 310
Helix 182
AU2
T
3625 3633Right-handed alpha
Helix 183
AU3
T
3634 3640Right-handed alpha
Helix 184
AU4
T
3640 3654Right-handed alpha
Helix 185
AU5
T
3658 3678Right-handed alpha
Helix 186
AU6
T
3685 3707Right-handed alpha
Helix 187
AU7
T
3718 3727Right-handed alpha
Helix 188
AU8
T
3729 3734Right-handed alpha
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There are 4 sheets in PDB entry 6T9J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
977 980first strand
Strand 2
T
989 992anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
3331 3332first strand
Strand 2
T
3378 3382anti-parallel
Strand 3
T
3387 3395anti-parallel
Strand 4
T
3371 3374anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
3331 3332first strand
Strand 2
T
3378 3382anti-parallel
Strand 3
T
3387 3395anti-parallel
Strand 4
T
3400 3406anti-parallel
Strand 5
T
3456 3459anti-parallel
Strand 6
T
3448 3450anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
3464 3466first strand
Strand 2
T
3572 3575anti-parallel
Strand 3
T
3581 3583anti-parallel
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