Analysis of interatomic Contacts of Structural Units in PDB entry:
6T9K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6T9K entry

There are 11 chains in PDB entry 6T9K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ARG 112	GLU 360
C	ASP 3	MET 337
D	SER 56	PRO 798
E	TYR 8	ASP 467
F	PRO 30	TRP 149
G	PHE 67	ARG 206
H	TYR 181	ILE 418
I	ARG 418	ALA 525
K	LEU 152	LEU 1085
Q	THR 353	PRO 436
U	ALA 1	ALA 155

There are 96 helices in PDB entry 6T9K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	123	130	Right-handed alpha
Helix 2	AA2	B	178	183	Right-handed alpha
Helix 3	AA3	B	184	186	Right-handed 310
Helix 4	AA4	B	195	203	Right-handed alpha
Helix 5	AA5	B	288	300	Right-handed alpha
Helix 6	AA6	B	306	322	Right-handed alpha
Helix 7	AA7	B	341	345	Right-handed 310
Helix 8	AA8	C	7	19	Right-handed alpha
Helix 9	AA9	C	25	55	Right-handed alpha
Helix 10	AB1	C	60	66	Right-handed alpha
Helix 11	AB2	C	67	69	Right-handed 310
Helix 12	AB3	C	71	82	Right-handed alpha
Helix 13	AB4	C	192	202	Right-handed alpha
Helix 14	AB5	C	210	217	Right-handed alpha
Helix 15	AB6	C	217	222	Right-handed alpha
Helix 16	AB7	C	229	264	Right-handed alpha
Helix 17	AB8	C	301	313	Right-handed alpha
Helix 18	AB9	C	320	324	Right-handed 310
Helix 19	AC1	D	57	71	Right-handed alpha
Helix 20	AC2	D	74	87	Right-handed alpha
Helix 21	AC3	D	151	165	Right-handed alpha
Helix 22	AC4	D	170	190	Right-handed alpha
Helix 23	AC5	D	193	204	Right-handed alpha
Helix 24	AC6	D	208	213	Right-handed alpha
Helix 25	AC7	D	214	219	Right-handed alpha
Helix 26	AC8	D	224	229	Right-handed alpha
Helix 27	AC9	D	231	240	Right-handed alpha
Helix 28	AD1	D	247	259	Right-handed alpha
Helix 29	AD2	D	265	276	Right-handed alpha
Helix 30	AD3	D	431	444	Right-handed alpha
Helix 31	AD4	E	17	25	Right-handed alpha
Helix 32	AD5	E	30	59	Right-handed alpha
Helix 33	AD6	E	65	70	Right-handed alpha
Helix 34	AD7	E	70	76	Right-handed alpha
Helix 35	AD8	E	117	122	Right-handed alpha
Helix 36	AD9	E	220	232	Right-handed alpha
Helix 37	AE1	E	244	258	Right-handed alpha
Helix 38	AE2	E	264	278	Right-handed alpha
Helix 39	AE3	E	282	297	Right-handed alpha
Helix 40	AE4	E	305	309	Right-handed 310
Helix 41	AE5	E	311	320	Right-handed alpha
Helix 42	AE6	E	332	361	Right-handed alpha
Helix 43	AE7	E	368	381	Right-handed alpha
Helix 44	AE8	E	386	399	Right-handed alpha
Helix 45	AE9	E	402	407	Right-handed alpha
Helix 46	AF1	E	408	411	Right-handed 310
Helix 47	AF2	E	412	420	Right-handed alpha
Helix 48	AF3	E	429	433	Right-handed 310
Helix 49	AF4	E	446	460	Right-handed alpha
Helix 50	AF5	E	461	464	Right-handed 310
Helix 51	AF6	F	31	43	Right-handed alpha
Helix 52	AF7	F	50	78	Right-handed alpha
Helix 53	AF8	F	89	99	Right-handed alpha
Helix 54	AF9	F	110	122	Right-handed alpha
Helix 55	AG1	F	139	143	Right-handed 310
Helix 56	AG2	G	73	82	Right-handed alpha
Helix 57	AG3	G	89	101	Right-handed alpha
Helix 58	AG4	G	106	135	Right-handed alpha
Helix 59	AG5	G	136	145	Right-handed alpha
Helix 60	AG6	G	145	155	Right-handed alpha
Helix 61	AG7	G	168	177	Right-handed alpha
Helix 62	AG8	G	184	194	Right-handed alpha
Helix 63	AG9	H	183	188	Right-handed alpha
Helix 64	AH1	H	191	199	Right-handed alpha
Helix 65	AH2	H	211	221	Right-handed alpha
Helix 66	AH3	H	229	239	Right-handed alpha
Helix 67	AH4	H	243	256	Right-handed alpha
Helix 68	AH5	H	259	264	Right-handed alpha
Helix 69	AH6	H	268	284	Right-handed alpha
Helix 70	AH7	H	292	317	Right-handed alpha
Helix 71	AH8	H	340	349	Right-handed alpha
Helix 72	AH9	H	350	353	Right-handed 310
Helix 73	AI1	H	356	365	Right-handed alpha
Helix 74	AI2	H	407	418	Right-handed alpha
Helix 75	AI3	I	419	428	Right-handed alpha
Helix 76	AI4	I	439	468	Right-handed alpha
Helix 77	AI5	I	474	485	Right-handed alpha
Helix 78	AI6	I	507	524	Right-handed alpha
Helix 79	AI7	K	153	163	Right-handed alpha
Helix 80	AI8	K	167	185	Right-handed alpha
Helix 81	AI9	K	731	741	Right-handed alpha
Helix 82	AJ1	K	743	753	Right-handed alpha
Helix 83	AJ2	K	868	884	Right-handed alpha
Helix 84	AJ3	K	901	916	Right-handed alpha
Helix 85	AJ4	K	917	929	Right-handed alpha
Helix 86	AJ5	K	975	989	Right-handed alpha
Helix 87	AJ6	K	1000	1027	Right-handed alpha
Helix 88	AJ7	K	1035	1046	Right-handed alpha
Helix 89	AJ8	K	1053	1064	Right-handed alpha
Helix 90	AJ9	K	1065	1085	Right-handed alpha
Helix 91	AK1	Q	354	366	Right-handed alpha
Helix 92	AK2	Q	381	398	Right-handed alpha
Helix 93	AK3	U	17	29	Right-handed alpha
Helix 94	AK4	U	107	113	Right-handed alpha
Helix 95	AK5	U	125	137	Right-handed alpha
Helix 96	AK6	U	141	152	Right-handed alpha

There are 13 sheets in PDB entry 6T9K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	173	first strand
Strand 2	B	146	149	anti-parallel
Strand 3	B	138	141	anti-parallel
Strand 4	B	211	217	parallel
Strand 5	B	279	285	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	350	first strand
Strand 2	B	355	356	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	242	245	first strand
Strand 2	D	277	280	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	781	784	first strand
Strand 2	D	789	795	anti-parallel
Strand 3	D	456	462	parallel
Strand 4	E	134	138	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	469	474	first strand
Strand 2	D	480	485	anti-parallel
Strand 3	D	490	494	anti-parallel
Strand 4	D	518	521	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	528	533	first strand
Strand 2	D	539	544	anti-parallel
Strand 3	D	549	553	anti-parallel
Strand 4	D	559	563	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	570	574	first strand
Strand 2	D	583	586	anti-parallel
Strand 3	D	590	595	anti-parallel
Strand 4	D	598	606	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	612	617	first strand
Strand 2	D	623	628	anti-parallel
Strand 3	D	632	637	anti-parallel
Strand 4	D	643	648	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	654	659	first strand
Strand 2	D	665	670	anti-parallel
Strand 3	D	675	679	anti-parallel
Strand 4	D	685	689	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	701	702	first strand
Strand 2	D	708	712	anti-parallel
Strand 3	D	717	722	anti-parallel
Strand 4	D	768	773	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	101	first strand
Strand 2	E	107	108	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	115	116	first strand
Strand 2	K	998	999	anti-parallel
Strand 3	G	182	183	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	335	337	first strand
Strand 2	I	436	438	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6T9K

Analysis of interatomic Contacts of Structural Units in PDB entry:
6T9K