Analysis of interatomic Contacts of Structural Units in PDB entry:
6T9N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6T9N entry

There are 4 chains in PDB entry 6T9N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 213	LEU 700
B	ARG 213	LEU 700
C	ARG 213	LEU 700
D	ARG 213	LEU 700

There are 68 helices in PDB entry 6T9N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	213	242	Right-handed alpha
Helix 2	AA2	A	246	258	Right-handed alpha
Helix 3	AA3	A	275	285	Right-handed alpha
Helix 4	AA4	A	285	292	Right-handed alpha
Helix 5	AA5	A	334	338	Right-handed 310
Helix 6	AA6	A	398	412	Right-handed alpha
Helix 7	AA7	A	467	496	Right-handed alpha
Helix 8	AA8	A	506	528	Right-handed alpha
Helix 9	AA9	A	532	539	Right-handed alpha
Helix 10	AB1	A	548	573	Right-handed alpha
Helix 11	AB2	A	574	576	Right-handed 310
Helix 12	AB3	A	580	620	Right-handed alpha
Helix 13	AB4	A	623	627	Right-handed 310
Helix 14	AB5	A	628	642	Right-handed alpha
Helix 15	AB6	A	645	653	Right-handed alpha
Helix 16	AB7	A	655	668	Right-handed alpha
Helix 17	AB8	A	672	698	Right-handed alpha
Helix 18	AB9	B	214	242	Right-handed alpha
Helix 19	AC1	B	246	258	Right-handed alpha
Helix 20	AC2	B	275	285	Right-handed alpha
Helix 21	AC3	B	285	292	Right-handed alpha
Helix 22	AC4	B	334	338	Right-handed 310
Helix 23	AC5	B	398	412	Right-handed alpha
Helix 24	AC6	B	467	496	Right-handed alpha
Helix 25	AC7	B	506	528	Right-handed alpha
Helix 26	AC8	B	532	539	Right-handed alpha
Helix 27	AC9	B	548	573	Right-handed alpha
Helix 28	AD1	B	574	576	Right-handed 310
Helix 29	AD2	B	580	620	Right-handed alpha
Helix 30	AD3	B	623	627	Right-handed 310
Helix 31	AD4	B	628	642	Right-handed alpha
Helix 32	AD5	B	645	653	Right-handed alpha
Helix 33	AD6	B	655	668	Right-handed alpha
Helix 34	AD7	B	672	698	Right-handed alpha
Helix 35	AD8	C	214	242	Right-handed alpha
Helix 36	AD9	C	246	258	Right-handed alpha
Helix 37	AE1	C	275	285	Right-handed alpha
Helix 38	AE2	C	285	292	Right-handed alpha
Helix 39	AE3	C	334	338	Right-handed 310
Helix 40	AE4	C	398	412	Right-handed alpha
Helix 41	AE5	C	467	496	Right-handed alpha
Helix 42	AE6	C	506	528	Right-handed alpha
Helix 43	AE7	C	532	539	Right-handed alpha
Helix 44	AE8	C	548	573	Right-handed alpha
Helix 45	AE9	C	574	576	Right-handed 310
Helix 46	AF1	C	580	620	Right-handed alpha
Helix 47	AF2	C	623	627	Right-handed 310
Helix 48	AF3	C	628	642	Right-handed alpha
Helix 49	AF4	C	645	653	Right-handed alpha
Helix 50	AF5	C	655	668	Right-handed alpha
Helix 51	AF6	C	672	698	Right-handed alpha
Helix 52	AF7	D	214	242	Right-handed alpha
Helix 53	AF8	D	246	258	Right-handed alpha
Helix 54	AF9	D	275	285	Right-handed alpha
Helix 55	AG1	D	285	292	Right-handed alpha
Helix 56	AG2	D	334	338	Right-handed 310
Helix 57	AG3	D	398	412	Right-handed alpha
Helix 58	AG4	D	467	496	Right-handed alpha
Helix 59	AG5	D	506	528	Right-handed alpha
Helix 60	AG6	D	532	539	Right-handed alpha
Helix 61	AG7	D	548	573	Right-handed alpha
Helix 62	AG8	D	574	576	Right-handed 310
Helix 63	AG9	D	580	620	Right-handed alpha
Helix 64	AH1	D	623	627	Right-handed 310
Helix 65	AH2	D	628	642	Right-handed alpha
Helix 66	AH3	D	645	653	Right-handed alpha
Helix 67	AH4	D	655	668	Right-handed alpha
Helix 68	AH5	D	672	698	Right-handed alpha

There are 12 sheets in PDB entry 6T9N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	309	first strand
Strand 2	A	313	315	anti-parallel
Strand 3	A	419	430	anti-parallel
Strand 4	A	320	325	anti-parallel
Strand 5	A	391	394	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	309	first strand
Strand 2	A	313	315	anti-parallel
Strand 3	A	419	430	anti-parallel
Strand 4	A	435	444	anti-parallel
Strand 5	A	452	460	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	380	first strand
Strand 2	A	385	386	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	309	first strand
Strand 2	B	313	315	anti-parallel
Strand 3	B	419	430	anti-parallel
Strand 4	B	320	325	anti-parallel
Strand 5	B	391	394	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	309	first strand
Strand 2	B	313	315	anti-parallel
Strand 3	B	419	430	anti-parallel
Strand 4	B	435	444	anti-parallel
Strand 5	B	452	460	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	379	380	first strand
Strand 2	B	385	386	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	309	first strand
Strand 2	C	313	315	anti-parallel
Strand 3	C	419	430	anti-parallel
Strand 4	C	320	325	anti-parallel
Strand 5	C	391	394	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	309	first strand
Strand 2	C	313	315	anti-parallel
Strand 3	C	419	430	anti-parallel
Strand 4	C	435	444	anti-parallel
Strand 5	C	452	460	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	379	380	first strand
Strand 2	C	385	386	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	308	309	first strand
Strand 2	D	313	315	anti-parallel
Strand 3	D	419	430	anti-parallel
Strand 4	D	320	325	anti-parallel
Strand 5	D	391	394	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	308	309	first strand
Strand 2	D	313	315	anti-parallel
Strand 3	D	419	430	anti-parallel
Strand 4	D	435	444	anti-parallel
Strand 5	D	452	460	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	379	380	first strand
Strand 2	D	385	386	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6T9N

Analysis of interatomic Contacts of Structural Units in PDB entry:
6T9N