Analysis of interatomic Contacts of Structural Units in PDB entry:
6T9O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6T9O entry

There are 4 chains in PDB entry 6T9O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 214	ASP 702
B	GLU 214	ASP 702
C	GLU 214	ASP 702
D	GLU 214	ASP 702

There are 80 helices in PDB entry 6T9O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	215	241	Right-handed alpha
Helix 2	AA2	A	246	258	Right-handed alpha
Helix 3	AA3	A	275	285	Right-handed alpha
Helix 4	AA4	A	285	292	Right-handed alpha
Helix 5	AA5	A	334	338	Right-handed 310
Helix 6	AA6	A	363	367	Right-handed 310
Helix 7	AA7	A	370	374	Right-handed 310
Helix 8	AA8	A	398	412	Right-handed alpha
Helix 9	AA9	A	467	498	Right-handed alpha
Helix 10	AB1	A	506	528	Right-handed alpha
Helix 11	AB2	A	532	539	Right-handed alpha
Helix 12	AB3	A	548	573	Right-handed alpha
Helix 13	AB4	A	574	576	Right-handed 310
Helix 14	AB5	A	580	593	Right-handed alpha
Helix 15	AB6	A	593	620	Right-handed alpha
Helix 16	AB7	A	623	627	Right-handed 310
Helix 17	AB8	A	628	642	Right-handed alpha
Helix 18	AB9	A	645	653	Right-handed alpha
Helix 19	AC1	A	655	667	Right-handed alpha
Helix 20	AC2	A	672	701	Right-handed alpha
Helix 21	AC3	B	215	241	Right-handed alpha
Helix 22	AC4	B	246	258	Right-handed alpha
Helix 23	AC5	B	275	285	Right-handed alpha
Helix 24	AC6	B	285	292	Right-handed alpha
Helix 25	AC7	B	334	338	Right-handed 310
Helix 26	AC8	B	363	367	Right-handed 310
Helix 27	AC9	B	370	374	Right-handed 310
Helix 28	AD1	B	398	412	Right-handed alpha
Helix 29	AD2	B	467	498	Right-handed alpha
Helix 30	AD3	B	506	528	Right-handed alpha
Helix 31	AD4	B	532	539	Right-handed alpha
Helix 32	AD5	B	548	573	Right-handed alpha
Helix 33	AD6	B	574	576	Right-handed 310
Helix 34	AD7	B	580	593	Right-handed alpha
Helix 35	AD8	B	593	620	Right-handed alpha
Helix 36	AD9	B	623	627	Right-handed 310
Helix 37	AE1	B	628	642	Right-handed alpha
Helix 38	AE2	B	645	653	Right-handed alpha
Helix 39	AE3	B	655	667	Right-handed alpha
Helix 40	AE4	B	672	701	Right-handed alpha
Helix 41	AE5	C	215	241	Right-handed alpha
Helix 42	AE6	C	246	258	Right-handed alpha
Helix 43	AE7	C	275	285	Right-handed alpha
Helix 44	AE8	C	285	292	Right-handed alpha
Helix 45	AE9	C	334	338	Right-handed 310
Helix 46	AF1	C	363	367	Right-handed 310
Helix 47	AF2	C	370	374	Right-handed 310
Helix 48	AF3	C	398	412	Right-handed alpha
Helix 49	AF4	C	467	498	Right-handed alpha
Helix 50	AF5	C	506	528	Right-handed alpha
Helix 51	AF6	C	532	539	Right-handed alpha
Helix 52	AF7	C	548	573	Right-handed alpha
Helix 53	AF8	C	574	576	Right-handed 310
Helix 54	AF9	C	580	593	Right-handed alpha
Helix 55	AG1	C	593	620	Right-handed alpha
Helix 56	AG2	C	623	627	Right-handed 310
Helix 57	AG3	C	628	642	Right-handed alpha
Helix 58	AG4	C	645	653	Right-handed alpha
Helix 59	AG5	C	655	667	Right-handed alpha
Helix 60	AG6	C	672	701	Right-handed alpha
Helix 61	AG7	D	215	241	Right-handed alpha
Helix 62	AG8	D	246	258	Right-handed alpha
Helix 63	AG9	D	275	285	Right-handed alpha
Helix 64	AH1	D	285	292	Right-handed alpha
Helix 65	AH2	D	334	338	Right-handed 310
Helix 66	AH3	D	363	367	Right-handed 310
Helix 67	AH4	D	370	374	Right-handed 310
Helix 68	AH5	D	398	412	Right-handed alpha
Helix 69	AH6	D	467	498	Right-handed alpha
Helix 70	AH7	D	506	528	Right-handed alpha
Helix 71	AH8	D	532	539	Right-handed alpha
Helix 72	AH9	D	548	573	Right-handed alpha
Helix 73	AI1	D	574	576	Right-handed 310
Helix 74	AI2	D	580	593	Right-handed alpha
Helix 75	AI3	D	593	620	Right-handed alpha
Helix 76	AI4	D	623	627	Right-handed 310
Helix 77	AI5	D	628	642	Right-handed alpha
Helix 78	AI6	D	645	653	Right-handed alpha
Helix 79	AI7	D	655	667	Right-handed alpha
Helix 80	AI8	D	672	701	Right-handed alpha

There are 12 sheets in PDB entry 6T9O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	309	first strand
Strand 2	A	313	315	anti-parallel
Strand 3	A	419	430	anti-parallel
Strand 4	A	320	325	anti-parallel
Strand 5	A	393	394	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	309	first strand
Strand 2	A	313	315	anti-parallel
Strand 3	A	419	430	anti-parallel
Strand 4	A	435	444	anti-parallel
Strand 5	A	452	456	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	380	first strand
Strand 2	A	385	386	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	309	first strand
Strand 2	B	313	315	anti-parallel
Strand 3	B	419	430	anti-parallel
Strand 4	B	320	325	anti-parallel
Strand 5	B	393	394	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	309	first strand
Strand 2	B	313	315	anti-parallel
Strand 3	B	419	430	anti-parallel
Strand 4	B	435	444	anti-parallel
Strand 5	B	452	456	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	379	380	first strand
Strand 2	B	385	386	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	309	first strand
Strand 2	C	313	315	anti-parallel
Strand 3	C	419	430	anti-parallel
Strand 4	C	320	325	anti-parallel
Strand 5	C	393	394	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	309	first strand
Strand 2	C	313	315	anti-parallel
Strand 3	C	419	430	anti-parallel
Strand 4	C	435	444	anti-parallel
Strand 5	C	452	456	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	379	380	first strand
Strand 2	C	385	386	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	308	309	first strand
Strand 2	D	313	315	anti-parallel
Strand 3	D	419	430	anti-parallel
Strand 4	D	320	325	anti-parallel
Strand 5	D	393	394	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	308	309	first strand
Strand 2	D	313	315	anti-parallel
Strand 3	D	419	430	anti-parallel
Strand 4	D	435	444	anti-parallel
Strand 5	D	452	456	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	379	380	first strand
Strand 2	D	385	386	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6T9O

Analysis of interatomic Contacts of Structural Units in PDB entry:
6T9O