Analysis of interatomic Contacts of Structural Units in PDB entry:
6TBC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6TBC entry

There are 8 chains in PDB entry 6TBC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER -3	LYS 256
B	SER -3	LYS 256
C	HIS -2	LYS 256
D	MET -1	LYS 256
E	MET -1	LYS 256
F	MET -1	LYS 256
G	HIS -2	LYS 256
H	MET -1	LYS 256

There are114 helices in PDB entry 6TBC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	31	Right-handed alpha
Helix 2	AA2	A	41	52	Right-handed alpha
Helix 3	AA3	A	53	55	Right-handed 310
Helix 4	AA4	A	69	84	Right-handed alpha
Helix 5	AA5	A	98	104	Right-handed alpha
Helix 6	AA6	A	105	109	Right-handed 310
Helix 7	AA7	A	110	122	Right-handed alpha
Helix 8	AA8	A	122	133	Right-handed alpha
Helix 9	AA9	A	134	136	Right-handed 310
Helix 10	AB1	A	147	151	Right-handed 310
Helix 11	AB2	A	157	179	Right-handed alpha
Helix 12	AB3	A	203	215	Right-handed alpha
Helix 13	AB4	A	222	235	Right-handed alpha
Helix 14	AB5	A	236	239	Right-handed 310
Helix 15	AB6	A	251	253	Right-handed 310
Helix 16	AB7	B	19	31	Right-handed alpha
Helix 17	AB8	B	41	52	Right-handed alpha
Helix 18	AB9	B	53	55	Right-handed 310
Helix 19	AC1	B	69	84	Right-handed alpha
Helix 20	AC2	B	98	104	Right-handed alpha
Helix 21	AC3	B	105	109	Right-handed 310
Helix 22	AC4	B	110	122	Right-handed alpha
Helix 23	AC5	B	122	134	Right-handed alpha
Helix 24	AC6	B	147	151	Right-handed 310
Helix 25	AC7	B	157	179	Right-handed alpha
Helix 26	AC8	B	203	215	Right-handed alpha
Helix 27	AC9	B	222	235	Right-handed alpha
Helix 28	AD1	B	236	239	Right-handed 310
Helix 29	AD2	B	251	255	Right-handed 310
Helix 30	AD3	C	19	31	Right-handed alpha
Helix 31	AD4	C	41	52	Right-handed alpha
Helix 32	AD5	C	53	55	Right-handed 310
Helix 33	AD6	C	69	84	Right-handed alpha
Helix 34	AD7	C	98	104	Right-handed alpha
Helix 35	AD8	C	105	109	Right-handed 310
Helix 36	AD9	C	110	122	Right-handed alpha
Helix 37	AE1	C	122	134	Right-handed alpha
Helix 38	AE2	C	147	151	Right-handed 310
Helix 39	AE3	C	157	179	Right-handed alpha
Helix 40	AE4	C	203	215	Right-handed alpha
Helix 41	AE5	C	222	235	Right-handed alpha
Helix 42	AE6	C	236	239	Right-handed 310
Helix 43	AE7	C	251	255	Right-handed 310
Helix 44	AE8	D	19	31	Right-handed alpha
Helix 45	AE9	D	41	52	Right-handed alpha
Helix 46	AF1	D	53	55	Right-handed 310
Helix 47	AF2	D	69	84	Right-handed alpha
Helix 48	AF3	D	98	104	Right-handed alpha
Helix 49	AF4	D	105	109	Right-handed 310
Helix 50	AF5	D	110	122	Right-handed alpha
Helix 51	AF6	D	122	134	Right-handed alpha
Helix 52	AF7	D	147	151	Right-handed 310
Helix 53	AF8	D	157	179	Right-handed alpha
Helix 54	AF9	D	203	215	Right-handed alpha
Helix 55	AG1	D	222	235	Right-handed alpha
Helix 56	AG2	D	236	239	Right-handed 310
Helix 57	AG3	D	251	253	Right-handed 310
Helix 58	AG4	E	19	31	Right-handed alpha
Helix 59	AG5	E	41	52	Right-handed alpha
Helix 60	AG6	E	53	55	Right-handed 310
Helix 61	AG7	E	69	84	Right-handed alpha
Helix 62	AG8	E	98	104	Right-handed alpha
Helix 63	AG9	E	105	109	Right-handed 310
Helix 64	AH1	E	110	122	Right-handed alpha
Helix 65	AH2	E	122	134	Right-handed alpha
Helix 66	AH3	E	147	151	Right-handed 310
Helix 67	AH4	E	157	179	Right-handed alpha
Helix 68	AH5	E	203	215	Right-handed alpha
Helix 69	AH6	E	222	235	Right-handed alpha
Helix 70	AH7	E	236	239	Right-handed 310
Helix 71	AH8	E	251	255	Right-handed 310
Helix 72	AH9	F	19	31	Right-handed alpha
Helix 73	AI1	F	41	52	Right-handed alpha
Helix 74	AI2	F	53	55	Right-handed 310
Helix 75	AI3	F	69	84	Right-handed alpha
Helix 76	AI4	F	98	104	Right-handed alpha
Helix 77	AI5	F	105	109	Right-handed 310
Helix 78	AI6	F	110	122	Right-handed alpha
Helix 79	AI7	F	122	133	Right-handed alpha
Helix 80	AI8	F	134	136	Right-handed 310
Helix 81	AI9	F	147	151	Right-handed 310
Helix 82	AJ1	F	157	179	Right-handed alpha
Helix 83	AJ2	F	203	215	Right-handed alpha
Helix 84	AJ3	F	222	235	Right-handed alpha
Helix 85	AJ4	F	236	239	Right-handed 310
Helix 86	AJ5	F	251	255	Right-handed 310
Helix 87	AJ6	G	19	31	Right-handed alpha
Helix 88	AJ7	G	41	52	Right-handed alpha
Helix 89	AJ8	G	53	55	Right-handed 310
Helix 90	AJ9	G	69	84	Right-handed alpha
Helix 91	AK1	G	98	104	Right-handed alpha
Helix 92	AK2	G	105	109	Right-handed 310
Helix 93	AK3	G	110	122	Right-handed alpha
Helix 94	AK4	G	122	134	Right-handed alpha
Helix 95	AK5	G	147	151	Right-handed 310
Helix 96	AK6	G	157	179	Right-handed alpha
Helix 97	AK7	G	203	215	Right-handed alpha
Helix 98	AK8	G	222	235	Right-handed alpha
Helix 99	AK9	G	236	239	Right-handed 310
Helix 100	AL1	G	251	255	Right-handed 310
Helix 101	AL2	H	19	31	Right-handed alpha
Helix 102	AL3	H	41	52	Right-handed alpha
Helix 103	AL4	H	53	55	Right-handed 310
Helix 104	AL5	H	69	84	Right-handed alpha
Helix 105	AL6	H	98	104	Right-handed alpha
Helix 106	AL7	H	105	109	Right-handed 310
Helix 107	AL8	H	110	122	Right-handed alpha
Helix 108	AL9	H	122	134	Right-handed alpha
Helix 109	AM1	H	147	151	Right-handed 310
Helix 110	AM2	H	157	179	Right-handed alpha
Helix 111	AM3	H	203	215	Right-handed alpha
Helix 112	AM4	H	222	235	Right-handed alpha
Helix 113	AM5	H	236	239	Right-handed 310
Helix 114	AM6	H	251	255	Right-handed 310

There are 10 sheets in PDB entry 6TBC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	64	first strand
Strand 2	A	34	39	parallel
Strand 3	A	8	12	parallel
Strand 4	A	89	92	parallel
Strand 5	A	140	146	parallel
Strand 6	A	183	190	parallel
Strand 7	A	245	248	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	256	first strand
Strand 2	C	153	154	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	64	first strand
Strand 2	B	34	39	parallel
Strand 3	B	8	12	parallel
Strand 4	B	89	92	parallel
Strand 5	B	140	146	parallel
Strand 6	B	183	190	parallel
Strand 7	B	245	248	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	154	first strand
Strand 2	D	255	256	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	64	first strand
Strand 2	C	34	39	parallel
Strand 3	C	8	12	parallel
Strand 4	C	89	92	parallel
Strand 5	C	140	146	parallel
Strand 6	C	183	190	parallel
Strand 7	C	245	248	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	64	first strand
Strand 2	D	34	39	parallel
Strand 3	D	8	12	parallel
Strand 4	D	89	92	parallel
Strand 5	D	140	146	parallel
Strand 6	D	183	190	parallel
Strand 7	D	245	248	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	62	64	first strand
Strand 2	E	34	39	parallel
Strand 3	E	8	12	parallel
Strand 4	E	89	92	parallel
Strand 5	E	140	146	parallel
Strand 6	E	183	190	parallel
Strand 7	E	245	248	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	61	64	first strand
Strand 2	F	34	39	parallel
Strand 3	F	8	12	parallel
Strand 4	F	89	92	parallel
Strand 5	F	140	146	parallel
Strand 6	F	183	190	parallel
Strand 7	F	245	248	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	62	64	first strand
Strand 2	G	34	39	parallel
Strand 3	G	8	12	parallel
Strand 4	G	89	92	parallel
Strand 5	G	140	146	parallel
Strand 6	G	183	190	parallel
Strand 7	G	245	248	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	62	64	first strand
Strand 2	H	34	39	parallel
Strand 3	H	8	12	parallel
Strand 4	H	89	92	parallel
Strand 5	H	140	146	parallel
Strand 6	H	183	190	parallel
Strand 7	H	245	248	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6TBC

Analysis of interatomic Contacts of Structural Units in PDB entry:
6TBC