Analysis of interatomic Contacts of Structural Units in PDB entry:
6TBL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6TBL entry

There are 6 chains in PDB entry 6TBL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 913	SER 1031
B	LEU 912	SER 1031
C	GLY 0	LYS 155
D	GLY -1	LYS 155
E	GLY 2	GLU 335
F	GLY 0	GLU 335

There are 31 helices in PDB entry 6TBL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	914	923	Right-handed alpha
Helix 2	AA2	A	927	945	Right-handed alpha
Helix 3	AA3	A	945	950	Right-handed alpha
Helix 4	AA4	A	952	964	Right-handed alpha
Helix 5	AA5	A	968	983	Right-handed alpha
Helix 6	AA6	A	986	1001	Right-handed alpha
Helix 7	AA7	A	1002	1007	Right-handed 310
Helix 8	AA8	A	1009	1025	Right-handed alpha
Helix 9	AA9	B	914	923	Right-handed alpha
Helix 10	AB1	B	927	945	Right-handed alpha
Helix 11	AB2	B	945	950	Right-handed alpha
Helix 12	AB3	B	952	964	Right-handed alpha
Helix 13	AB4	B	968	982	Right-handed alpha
Helix 14	AB5	B	983	985	Right-handed 310
Helix 15	AB6	B	986	1001	Right-handed alpha
Helix 16	AB7	B	1001	1006	Right-handed alpha
Helix 17	AB8	B	1009	1025	Right-handed alpha
Helix 18	AB9	C	9	21	Right-handed alpha
Helix 19	AC1	C	35	44	Right-handed alpha
Helix 20	AC2	C	62	64	Right-handed 310
Helix 21	AC3	C	88	104	Right-handed alpha
Helix 22	AC4	C	121	131	Right-handed alpha
Helix 23	AC5	C	131	140	Right-handed alpha
Helix 24	AC6	C	141	153	Right-handed alpha
Helix 25	AC7	D	9	21	Right-handed alpha
Helix 26	AC8	D	35	44	Right-handed alpha
Helix 27	AC9	D	62	64	Right-handed 310
Helix 28	AD1	D	88	104	Right-handed alpha
Helix 29	AD2	D	121	131	Right-handed alpha
Helix 30	AD3	D	131	140	Right-handed alpha
Helix 31	AD4	D	141	153	Right-handed alpha

There are 16 sheets in PDB entry 6TBL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	69	first strand
Strand 2	C	74	79	anti-parallel
Strand 3	C	109	114	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	69	first strand
Strand 2	D	74	79	anti-parallel
Strand 3	D	109	114	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	10	first strand
Strand 2	E	328	334	anti-parallel
Strand 3	E	318	323	anti-parallel
Strand 4	E	306	311	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	22	first strand
Strand 2	E	28	33	anti-parallel
Strand 3	E	38	44	anti-parallel
Strand 4	E	47	54	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	62	67	first strand
Strand 2	E	74	78	anti-parallel
Strand 3	E	82	87	anti-parallel
Strand 4	E	94	100	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	106	111	first strand
Strand 2	E	117	122	anti-parallel
Strand 3	E	127	131	anti-parallel
Strand 4	E	139	144	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	151	156	first strand
Strand 2	E	163	167	anti-parallel
Strand 3	E	172	177	anti-parallel
Strand 4	E	184	190	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	197	202	first strand
Strand 2	E	208	213	anti-parallel
Strand 3	E	218	224	anti-parallel
Strand 4	E	240	247	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	255	260	first strand
Strand 2	E	267	271	anti-parallel
Strand 3	E	276	281	anti-parallel
Strand 4	E	292	298	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	10	first strand
Strand 2	F	328	334	anti-parallel
Strand 3	F	318	323	anti-parallel
Strand 4	F	306	311	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	17	22	first strand
Strand 2	F	28	33	anti-parallel
Strand 3	F	38	44	anti-parallel
Strand 4	F	47	54	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	62	67	first strand
Strand 2	F	74	78	anti-parallel
Strand 3	F	82	87	anti-parallel
Strand 4	F	94	100	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	106	111	first strand
Strand 2	F	117	122	anti-parallel
Strand 3	F	127	132	anti-parallel
Strand 4	F	138	144	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	151	156	first strand
Strand 2	F	163	167	anti-parallel
Strand 3	F	172	177	anti-parallel
Strand 4	F	184	190	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	197	202	first strand
Strand 2	F	208	213	anti-parallel
Strand 3	F	218	224	anti-parallel
Strand 4	F	240	247	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	255	260	first strand
Strand 2	F	267	271	anti-parallel
Strand 3	F	276	281	anti-parallel
Strand 4	F	292	298	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6TBL

Analysis of interatomic Contacts of Structural Units in PDB entry:
6TBL