Analysis of interatomic Contacts of Structural Units in PDB entry:
6TC6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TC6 entry

There are 2 chains in PDB entry 6TC6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2LYS 275
C
 PRO 2LYS 275
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6TC6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 19Right-handed alpha
Helix 2
AA2
A
40 46Right-handed alpha
Helix 3
AA3
A
125 129Right-handed 310
Helix 4
AA4
A
145 154Right-handed alpha
Helix 5
AA5
A
159 165Right-handed alpha
Helix 6
AA6
A
174 186Right-handed alpha
Helix 7
AA7
A
192 196Right-handed 310
Helix 8
AA8
A
197 217Right-handed alpha
Helix 9
AA9
C
3 19Right-handed alpha
Helix 10
AB1
C
40 46Right-handed alpha
Helix 11
AB2
C
83 87Right-handed 310
Helix 12
AB3
C
125 129Right-handed 310
Helix 13
AB4
C
145 154Right-handed alpha
Helix 14
AB5
C
159 165Right-handed alpha
Helix 15
AB6
C
174 186Right-handed alpha
Helix 16
AB7
C
192 196Right-handed 310
Helix 17
AB8
C
197 217Right-handed alpha
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There are 6 sheets in PDB entry 6TC6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 28first strand
Strand 2
A
96 102anti-parallel
Strand 3
A
107 111anti-parallel
Strand 4
A
78 82anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
59 63anti-parallel
Strand 3
A
68 72anti-parallel
Strand 4
A
118 122anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 260first strand
Strand 2
A
267 269anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
23 28first strand
Strand 2
C
96 102anti-parallel
Strand 3
C
107 111anti-parallel
Strand 4
C
78 82anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 56first strand
Strand 2
C
59 63anti-parallel
Strand 3
C
68 72anti-parallel
Strand 4
C
118 122anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
258 260first strand
Strand 2
C
267 269anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il