Analysis of interatomic Contacts of Structural Units in PDB entry:
6TD6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TD6 entry

There are 2 chains in PDB entry 6TD6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6LEU 1122
B
 TYR 100ASP 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 6TD6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 19Right-handed alpha
Helix 2
AA2
A
19 41Right-handed alpha
Helix 3
AA3
A
59 73Right-handed alpha
Helix 4
AA4
A
84 89Right-handed alpha
Helix 5
AA5
A
272 286Right-handed alpha
Helix 6
AA6
A
288 295Right-handed alpha
Helix 7
AA7
A
309 318Right-handed alpha
Helix 8
AA8
A
326 341Right-handed alpha
Helix 9
AA9
A
371 380Right-handed alpha
Helix 10
AB1
A
409 419Right-handed alpha
Helix 11
AB2
A
435 467Right-handed alpha
Helix 12
AB3
A
468 492Right-handed alpha
Helix 13
AB4
A
500 504Right-handed 310
Helix 14
AB5
A
505 511Right-handed alpha
Helix 15
AB6
A
515 531Right-handed alpha
Helix 16
AB7
A
559 588Right-handed alpha
Helix 17
AB8
A
589 591Right-handed 310
Helix 18
AB9
A
593 628Right-handed alpha
Helix 19
AC1
A
649 669Right-handed alpha
Helix 20
AC2
A
671 690Right-handed alpha
Helix 21
AC3
A
709 718Right-handed alpha
Helix 22
AC4
A
719 721Right-handed 310
Helix 23
AC5
A
770 785Right-handed alpha
Helix 24
AC6
A
802 812Right-handed alpha
Helix 25
AC7
A
837 854Right-handed alpha
Helix 26
AC8
A
916 935Right-handed alpha
Helix 27
AC9
A
936 937Right-handed 310
Helix 28
AD1
A
938 942Right-handed 310
Helix 29
AD2
A
950 982Right-handed alpha
Helix 30
AD3
A
984 1010Right-handed alpha
Helix 31
AD4
A
1014 1042Right-handed alpha
Helix 32
AD5
A
1046 1076Right-handed alpha
Helix 33
AD6
A
1081 1113Right-handed alpha
Helix 34
AD7
B
130 135Right-handed 310
Helix 35
AD8
B
159 177Right-handed alpha
Helix 36
AD9
B
198 203Right-handed 310
Helix 37
AE1
B
214 216Right-handed 310
Helix 38
AE2
B
217 228Right-handed alpha
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There are 5 sheets in PDB entry 6TD6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 400first strand
Strand 2
A
255 259anti-parallel
Strand 3
A
427 428anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
790 791first strand
Strand 2
A
898 911anti-parallel
Strand 3
A
863 867anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
790 791first strand
Strand 2
A
898 911anti-parallel
Strand 3
A
734 740anti-parallel
Strand 4
A
945 946anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 138first strand
Strand 2
B
157 158anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 145first strand
Strand 2
B
182 186parallel
Strand 3
B
206 210anti-parallel
Strand 4
B
241 244anti-parallel
Strand 5
B
232 234anti-parallel
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