Analysis of interatomic Contacts of Structural Units in PDB entry:
6TD9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TD9 entry

There are 2 chains in PDB entry 6TD9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 24ARG 268
B
 PRO 22ARG 268
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 6TD9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
87 102Right-handed alpha
Helix 2
AA2
A
113 116Right-handed 310
Helix 3
AA3
A
117 124Right-handed alpha
Helix 4
AA4
A
128 132Right-handed 310
Helix 5
AA5
A
134 137Right-handed 310
Helix 6
AA6
A
185 197Right-handed alpha
Helix 7
AA7
A
209 223Right-handed alpha
Helix 8
AA8
A
234 245Right-handed alpha
Helix 9
AA9
A
248 250Right-handed 310
Helix 10
AB1
B
87 102Right-handed alpha
Helix 11
AB2
B
113 116Right-handed 310
Helix 12
AB3
B
117 125Right-handed alpha
Helix 13
AB4
B
128 132Right-handed 310
Helix 14
AB5
B
134 137Right-handed 310
Helix 15
AB6
B
185 197Right-handed alpha
Helix 16
AB7
B
209 223Right-handed alpha
Helix 17
AB8
B
234 245Right-handed alpha
Helix 18
AB9
B
248 250Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 6TD9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 52first strand
Strand 2
A
68 81anti-parallel
Strand 3
A
166 175anti-parallel
Strand 4
A
152 160anti-parallel
Strand 5
A
139 144anti-parallel
Strand 6
A
105 111anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
62 65anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 201first strand
Strand 2
A
262 267anti-parallel
Strand 3
A
227 231anti-parallel
Strand 4
A
252 254parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 52first strand
Strand 2
B
68 81anti-parallel
Strand 3
B
165 175anti-parallel
Strand 4
B
152 161anti-parallel
Strand 5
B
139 144anti-parallel
Strand 6
B
105 111anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 58first strand
Strand 2
B
63 65anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 201first strand
Strand 2
B
262 266anti-parallel
Strand 3
B
228 231anti-parallel
Strand 4
B
252 254parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il