Analysis of interatomic Contacts of Structural Units in PDB entry:
6TDW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TDW entry

There are 7 chains in PDB entry 6TDW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 463LYS 487
H
 VAL 17GLU 476
B
 ALA 3SER 337
C
 ASP 12SER 168
M
 VAL 222GLY 264
N
 LEU 82LYS 112
T
 ASN 50THR 58
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 6TDW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
474 487Right-handed alpha
Helix 2
AA2
H
40 58Right-handed alpha
Helix 3
AA3
H
59 79Right-handed alpha
Helix 4
AA4
H
81 103Right-handed alpha
Helix 5
AA5
H
111 125Right-handed alpha
Helix 6
AA6
H
267 279Right-handed alpha
Helix 7
AA7
H
280 291Right-handed alpha
Helix 8
AA8
H
293 297Right-handed 310
Helix 9
AA9
H
299 307Right-handed alpha
Helix 10
AB1
H
309 330Right-handed alpha
Helix 11
AB2
H
338 358Right-handed alpha
Helix 12
AB3
H
444 455Right-handed alpha
Helix 13
AB4
H
456 476Right-handed alpha
Helix 14
AB5
B
12 30Right-handed alpha
Helix 15
AB6
B
56 68Right-handed alpha
Helix 16
AB7
B
98 103Right-handed alpha
Helix 17
AB8
B
104 107Right-handed 310
Helix 18
AB9
B
121 164Right-handed alpha
Helix 19
AC1
B
180 197Right-handed alpha
Helix 20
AC2
B
198 205Right-handed alpha
Helix 21
AC3
B
216 223Right-handed alpha
Helix 22
AC4
B
235 249Right-handed alpha
Helix 23
AC5
B
277 292Right-handed alpha
Helix 24
AC6
B
293 310Right-handed alpha
Helix 25
AC7
B
324 337Right-handed alpha
Helix 26
AC8
C
13 25Right-handed alpha
Helix 27
AC9
C
36 42Right-handed alpha
Helix 28
AD1
C
47 60Right-handed alpha
Helix 29
AD2
C
65 87Right-handed alpha
Helix 30
AD3
C
89 95Right-handed alpha
Helix 31
AD4
C
102 104Right-handed 310
Helix 32
AD5
C
105 130Right-handed alpha
Helix 33
AD6
C
131 150Right-handed alpha
Helix 34
AD7
C
153 168Right-handed alpha
Helix 35
AD8
M
239 246Right-handed alpha
Helix 36
AD9
M
249 263Right-handed alpha
Helix 37
AE1
N
84 112Right-handed alpha
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There are 2 sheets in PDB entry 6TDW. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 9first strand
Strand 2
B
33 38parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 51first strand
Strand 2
B
264 268parallel
Strand 3
B
256 261anti-parallel
Strand 4
B
69 73anti-parallel
Strand 5
B
93 97anti-parallel
Strand 6
B
229 232parallel
Strand 7
B
171 175parallel
Strand 8
B
207 211parallel
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