Analysis of interatomic Contacts of Structural Units in PDB entry:
6TDY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6TDY entry

There are 26 chains in PDB entry 6TDY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 26	VAL 562
B	LYS 26	VAL 562
C	LEU 23	VAL 562
D	ASP 15	LYS 501
E	ASP 15	LYS 501
F	ASP 15	LYS 501
G	GLY 3	TRP 305
H	GLN 17	HIS 176
I	SER 2	GLU 67
J	ALA 23	ILE 192
K	ALA 23	ILE 192
L	ALA 23	ILE 192
M	VAL 22	GLY 264
N	ASN 20	GLU 68
O	ALA 24	SER 104
P	ALA 24	SER 104
Q	ALA 24	SER 104
R	ALA 24	SER 104
S	ALA 24	SER 104
T	ALA 24	SER 104
U	ALA 24	SER 104
V	ALA 24	SER 104
W	ALA 24	SER 104
X	ALA 24	SER 104
h	PRO 281	GLN 329
c	VAL 14	PRO 103

There are217 helices in PDB entry 6TDY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	150	154	Right-handed 310
Helix 2	AA2	A	165	172	Right-handed alpha
Helix 3	AA3	A	189	200	Right-handed alpha
Helix 4	AA4	A	200	208	Right-handed alpha
Helix 5	AA5	A	224	238	Right-handed alpha
Helix 6	AA6	A	240	242	Right-handed 310
Helix 7	AA7	A	254	260	Right-handed alpha
Helix 8	AA8	A	260	275	Right-handed alpha
Helix 9	AA9	A	285	300	Right-handed alpha
Helix 10	AB1	A	305	309	Right-handed 310
Helix 11	AB2	A	310	311	Right-handed 310
Helix 12	AB3	A	312	322	Right-handed alpha
Helix 13	AB4	A	328	332	Right-handed 310
Helix 14	AB5	A	351	361	Right-handed alpha
Helix 15	AB6	A	368	373	Right-handed alpha
Helix 16	AB7	A	395	419	Right-handed alpha
Helix 17	AB8	A	427	441	Right-handed alpha
Helix 18	AB9	A	447	460	Right-handed alpha
Helix 19	AC1	A	470	480	Right-handed alpha
Helix 20	AC2	A	482	487	Right-handed alpha
Helix 21	AC3	A	502	510	Right-handed alpha
Helix 22	AC4	A	515	541	Right-handed alpha
Helix 23	AC5	A	545	562	Right-handed alpha
Helix 24	AC6	B	87	91	Right-handed 310
Helix 25	AC7	B	165	172	Right-handed alpha
Helix 26	AC8	B	189	208	Right-handed alpha
Helix 27	AC9	B	224	238	Right-handed alpha
Helix 28	AD1	B	239	242	Right-handed 310
Helix 29	AD2	B	254	275	Right-handed alpha
Helix 30	AD3	B	285	300	Right-handed alpha
Helix 31	AD4	B	305	309	Right-handed 310
Helix 32	AD5	B	312	322	Right-handed alpha
Helix 33	AD6	B	351	359	Right-handed alpha
Helix 34	AD7	B	368	374	Right-handed alpha
Helix 35	AD8	B	389	394	Right-handed alpha
Helix 36	AD9	B	395	419	Right-handed alpha
Helix 37	AE1	B	427	441	Right-handed alpha
Helix 38	AE2	B	447	460	Right-handed alpha
Helix 39	AE3	B	470	480	Right-handed alpha
Helix 40	AE4	B	482	487	Right-handed alpha
Helix 41	AE5	B	502	510	Right-handed alpha
Helix 42	AE6	B	515	542	Right-handed alpha
Helix 43	AE7	B	544	562	Right-handed alpha
Helix 44	AE8	C	109	113	Right-handed 310
Helix 45	AE9	C	165	171	Right-handed alpha
Helix 46	AF1	C	189	208	Right-handed alpha
Helix 47	AF2	C	224	238	Right-handed alpha
Helix 48	AF3	C	254	275	Right-handed alpha
Helix 49	AF4	C	286	300	Right-handed alpha
Helix 50	AF5	C	305	309	Right-handed 310
Helix 51	AF6	C	312	322	Right-handed alpha
Helix 52	AF7	C	329	332	Right-handed 310
Helix 53	AF8	C	351	359	Right-handed alpha
Helix 54	AF9	C	368	373	Right-handed alpha
Helix 55	AG1	C	389	393	Right-handed 310
Helix 56	AG2	C	395	416	Right-handed alpha
Helix 57	AG3	C	427	441	Right-handed alpha
Helix 58	AG4	C	447	460	Right-handed alpha
Helix 59	AG5	C	467	469	Right-handed 310
Helix 60	AG6	C	470	481	Right-handed alpha
Helix 61	AG7	C	482	487	Right-handed alpha
Helix 62	AG8	C	501	510	Right-handed alpha
Helix 63	AG9	C	516	541	Right-handed alpha
Helix 64	AH1	C	544	562	Right-handed alpha
Helix 65	AH2	D	48	53	Right-handed alpha
Helix 66	AH3	D	172	188	Right-handed alpha
Helix 67	AH4	D	200	214	Right-handed alpha
Helix 68	AH5	D	235	241	Right-handed alpha
Helix 69	AH6	D	242	256	Right-handed alpha
Helix 70	AH7	D	267	283	Right-handed alpha
Helix 71	AH8	D	294	304	Right-handed alpha
Helix 72	AH9	D	323	326	Right-handed 310
Helix 73	AI1	D	329	337	Right-handed alpha
Helix 74	AI2	D	346	352	Right-handed alpha
Helix 75	AI3	D	374	399	Right-handed alpha
Helix 76	AI4	D	402	406	Right-handed 310
Helix 77	AI5	D	407	424	Right-handed alpha
Helix 78	AI6	D	431	436	Right-handed alpha
Helix 79	AI7	D	450	456	Right-handed alpha
Helix 80	AI8	D	464	468	Right-handed 310
Helix 81	AI9	D	472	501	Right-handed alpha
Helix 82	AJ1	E	48	53	Right-handed alpha
Helix 83	AJ2	E	98	102	Right-handed 310
Helix 84	AJ3	E	148	155	Right-handed alpha
Helix 85	AJ4	E	172	187	Right-handed alpha
Helix 86	AJ5	E	200	209	Right-handed alpha
Helix 87	AJ6	E	209	214	Right-handed alpha
Helix 88	AJ7	E	235	240	Right-handed alpha
Helix 89	AJ8	E	241	256	Right-handed alpha
Helix 90	AJ9	E	268	283	Right-handed alpha
Helix 91	AK1	E	294	304	Right-handed alpha
Helix 92	AK2	E	322	326	Right-handed 310
Helix 93	AK3	E	329	337	Right-handed alpha
Helix 94	AK4	E	346	352	Right-handed alpha
Helix 95	AK5	E	374	399	Right-handed alpha
Helix 96	AK6	E	402	406	Right-handed 310
Helix 97	AK7	E	407	425	Right-handed alpha
Helix 98	AK8	E	429	433	Right-handed 310
Helix 99	AK9	E	444	456	Right-handed alpha
Helix 100	AL1	E	464	468	Right-handed 310
Helix 101	AL2	E	472	501	Right-handed alpha
Helix 102	AL3	F	48	53	Right-handed alpha
Helix 103	AL4	F	98	102	Right-handed 310
Helix 104	AL5	F	148	154	Right-handed alpha
Helix 105	AL6	F	172	184	Right-handed alpha
Helix 106	AL7	F	200	214	Right-handed alpha
Helix 107	AL8	F	235	240	Right-handed alpha
Helix 108	AL9	F	242	256	Right-handed alpha
Helix 109	AM1	F	267	283	Right-handed alpha
Helix 110	AM2	F	294	304	Right-handed alpha
Helix 111	AM3	F	323	326	Right-handed 310
Helix 112	AM4	F	329	336	Right-handed alpha
Helix 113	AM5	F	337	339	Right-handed 310
Helix 114	AM6	F	347	352	Right-handed alpha
Helix 115	AM7	F	374	399	Right-handed alpha
Helix 116	AM8	F	402	406	Right-handed 310
Helix 117	AM9	F	407	425	Right-handed alpha
Helix 118	AN1	F	431	436	Right-handed alpha
Helix 119	AN2	F	443	456	Right-handed alpha
Helix 120	AN3	F	464	468	Right-handed 310
Helix 121	AN4	F	472	501	Right-handed alpha
Helix 122	AN5	G	4	44	Right-handed alpha
Helix 123	AN6	G	52	57	Right-handed alpha
Helix 124	AN7	G	62	70	Right-handed alpha
Helix 125	AN8	G	87	100	Right-handed alpha
Helix 126	AN9	G	111	121	Right-handed alpha
Helix 127	AO1	G	138	150	Right-handed alpha
Helix 128	AO2	G	179	193	Right-handed alpha
Helix 129	AO3	G	205	215	Right-handed alpha
Helix 130	AO4	G	216	295	Right-handed alpha
Helix 131	AO5	H	28	31	Right-handed 310
Helix 132	AO6	H	132	134	Right-handed 310
Helix 133	AO7	H	135	152	Right-handed alpha
Helix 134	AO8	H	154	176	Right-handed alpha
Helix 135	AO9	I	9	25	Right-handed alpha
Helix 136	AP1	I	28	35	Right-handed alpha
Helix 137	AP2	J	39	48	Right-handed alpha
Helix 138	AP3	J	55	65	Right-handed alpha
Helix 139	AP4	J	70	84	Right-handed alpha
Helix 140	AP5	J	96	110	Right-handed alpha
Helix 141	AP6	J	117	132	Right-handed alpha
Helix 142	AP7	J	133	145	Right-handed alpha
Helix 143	AP8	J	152	169	Right-handed alpha
Helix 144	AP9	J	174	179	Right-handed alpha
Helix 145	AQ1	K	39	49	Right-handed alpha
Helix 146	AQ2	K	51	64	Right-handed alpha
Helix 147	AQ3	K	70	84	Right-handed alpha
Helix 148	AQ4	K	96	110	Right-handed alpha
Helix 149	AQ5	K	117	132	Right-handed alpha
Helix 150	AQ6	K	134	147	Right-handed alpha
Helix 151	AQ7	K	152	169	Right-handed alpha
Helix 152	AQ8	K	174	179	Right-handed alpha
Helix 153	AQ9	L	39	48	Right-handed alpha
Helix 154	AR1	L	53	65	Right-handed alpha
Helix 155	AR2	L	70	84	Right-handed alpha
Helix 156	AR3	L	96	110	Right-handed alpha
Helix 157	AR4	L	117	132	Right-handed alpha
Helix 158	AR5	L	133	147	Right-handed alpha
Helix 159	AR6	L	152	169	Right-handed alpha
Helix 160	AR7	M	24	33	Right-handed alpha
Helix 161	AR8	M	48	63	Right-handed alpha
Helix 162	AR9	M	68	86	Right-handed alpha
Helix 163	AS1	M	98	103	Right-handed 310
Helix 164	AS2	M	104	118	Right-handed alpha
Helix 165	AS3	M	119	122	Right-handed 310
Helix 166	AS4	M	123	138	Right-handed alpha
Helix 167	AS5	M	152	170	Right-handed alpha
Helix 168	AS6	M	204	222	Right-handed alpha
Helix 169	AS7	M	239	246	Right-handed alpha
Helix 170	AS8	M	249	263	Right-handed alpha
Helix 171	AS9	N	44	68	Right-handed alpha
Helix 172	AT1	O	33	45	Right-handed alpha
Helix 173	AT2	O	47	67	Right-handed alpha
Helix 174	AT3	O	70	99	Right-handed alpha
Helix 175	AT4	P	33	44	Right-handed alpha
Helix 176	AT5	P	47	67	Right-handed alpha
Helix 177	AT6	P	70	99	Right-handed alpha
Helix 178	AT7	Q	33	47	Right-handed alpha
Helix 179	AT8	Q	47	67	Right-handed alpha
Helix 180	AT9	Q	68	71	Right-handed 310
Helix 181	AU1	Q	74	99	Right-handed alpha
Helix 182	AU2	R	33	45	Right-handed alpha
Helix 183	AU3	R	47	67	Right-handed alpha
Helix 184	AU4	R	70	75	Right-handed alpha
Helix 185	AU5	R	75	99	Right-handed alpha
Helix 186	AU6	S	33	45	Right-handed alpha
Helix 187	AU7	S	47	67	Right-handed alpha
Helix 188	AU8	S	70	75	Right-handed alpha
Helix 189	AU9	S	75	99	Right-handed alpha
Helix 190	AV1	T	33	36	Right-handed 310
Helix 191	AV2	T	37	47	Right-handed alpha
Helix 192	AV3	T	49	67	Right-handed alpha
Helix 193	AV4	T	68	72	Right-handed 310
Helix 194	AV5	T	74	99	Right-handed alpha
Helix 195	AV6	U	33	46	Right-handed alpha
Helix 196	AV7	U	47	67	Right-handed alpha
Helix 197	AV8	U	70	99	Right-handed alpha
Helix 198	AV9	V	33	45	Right-handed alpha
Helix 199	AW1	V	47	67	Right-handed alpha
Helix 200	AW2	V	70	99	Right-handed alpha
Helix 201	AW3	W	33	47	Right-handed alpha
Helix 202	AW4	W	47	67	Right-handed alpha
Helix 203	AW5	W	70	99	Right-handed alpha
Helix 204	AW6	X	33	45	Right-handed alpha
Helix 205	AW7	X	47	67	Right-handed alpha
Helix 206	AW8	X	70	75	Right-handed alpha
Helix 207	AW9	X	75	99	Right-handed alpha
Helix 208	AX1	h	282	293	Right-handed alpha
Helix 209	AX2	h	293	298	Right-handed alpha
Helix 210	AX3	h	299	307	Right-handed alpha
Helix 211	AX4	h	309	329	Right-handed alpha
Helix 212	AX5	c	15	25	Right-handed alpha
Helix 213	AX6	c	29	33	Right-handed 310
Helix 214	AX7	c	36	44	Right-handed alpha
Helix 215	AX8	c	79	88	Right-handed alpha
Helix 216	AX9	c	89	97	Right-handed alpha
Helix 217	AY1	c	97	102	Right-handed alpha

There are 27 sheets in PDB entry 6TDY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	59	first strand
Strand 2	A	96	99	anti-parallel
Strand 3	A	28	36	anti-parallel
Strand 4	A	39	44	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	107	first strand
Strand 2	A	141	143	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	366	first strand
Strand 2	A	181	184	parallel
Strand 3	A	341	343	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	221	first strand
Strand 2	A	245	249	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	74	first strand
Strand 2	A	80	84	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	36	first strand
Strand 2	B	39	44	anti-parallel
Strand 3	B	80	84	anti-parallel
Strand 4	B	69	74	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	59	first strand
Strand 2	B	97	99	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	107	first strand
Strand 2	B	141	143	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	249	first strand
Strand 2	B	217	221	parallel
Strand 3	B	280	284	parallel
Strand 4	B	337	340	parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	C	96	99	anti-parallel
Strand 3	C	28	36	anti-parallel
Strand 4	C	39	44	anti-parallel
Strand 5	C	80	84	anti-parallel
Strand 6	C	69	74	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	118	first strand
Strand 2	C	245	249	parallel
Strand 3	C	217	221	parallel
Strand 4	C	281	283	parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	364	367	first strand
Strand 2	C	181	185	parallel
Strand 3	C	341	344	parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	21	first strand
Strand 2	D	85	87	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	26	first strand
Strand 2	D	29	33	anti-parallel
Strand 3	D	68	72	anti-parallel
Strand 4	D	56	63	anti-parallel
Strand 5	D	44	47	anti-parallel

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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	341	344	first strand
Strand 2	D	163	167	parallel
Strand 3	D	313	321	parallel
Strand 4	D	260	266	parallel
Strand 5	D	191	197	parallel
Strand 6	D	225	230	parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	87	first strand
Strand 2	E	19	26	anti-parallel
Strand 3	E	29	33	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	47	first strand
Strand 2	E	56	63	anti-parallel
Strand 3	E	69	73	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	316	319	first strand
Strand 2	E	162	166	parallel
Strand 3	E	341	344	parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	192	199	first strand
Strand 2	E	225	231	parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	21	first strand
Strand 2	F	85	87	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	32	first strand
Strand 2	F	69	73	anti-parallel
Strand 3	F	58	62	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	94	96	first strand
Strand 2	F	124	126	anti-parallel

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There are 6 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	341	344	first strand
Strand 2	F	163	166	parallel
Strand 3	F	313	320	parallel
Strand 4	F	260	266	parallel
Strand 5	F	192	197	parallel
Strand 6	F	225	230	parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	74	77	first strand
Strand 2	G	156	166	parallel
Strand 3	G	169	178	anti-parallel

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There are 5 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	62	64	first strand
Strand 2	H	47	52	anti-parallel
Strand 3	H	120	124	parallel
Strand 4	H	112	115	anti-parallel
Strand 5	H	86	88	anti-parallel

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There are 5 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	75	78	first strand
Strand 2	H	66	70	anti-parallel
Strand 3	H	93	97	anti-parallel
Strand 4	H	104	108	anti-parallel
Strand 5	H	128	130	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	176	182	first strand
Strand 2	M	140	146	parallel
Strand 3	M	190	195	anti-parallel
Strand 4	M	198	203	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6TDY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6TDY