Analysis of interatomic Contacts of Structural Units in PDB entry:
6TEP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6TEP entry

There are 4 chains in PDB entry 6TEP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 417
D	THR 2	LYS 417
C	MET 1	ALA 419
B	MET 1	LEU 60

There are 57 helices in PDB entry 6TEP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	28	Right-handed alpha
Helix 2	AA2	A	48	52	Right-handed 310
Helix 3	AA3	A	104	117	Right-handed alpha
Helix 4	AA4	A	140	157	Right-handed alpha
Helix 5	AA5	A	164	182	Right-handed alpha
Helix 6	AA6	A	189	198	Right-handed alpha
Helix 7	AA7	A	213	217	Right-handed alpha
Helix 8	AA8	A	225	228	Right-handed 310
Helix 9	AA9	A	247	263	Right-handed alpha
Helix 10	AB1	A	266	277	Right-handed alpha
Helix 11	AB2	A	279	290	Right-handed alpha
Helix 12	AB3	A	293	319	Right-handed alpha
Helix 13	AB4	A	321	339	Right-handed alpha
Helix 14	AB5	A	344	357	Right-handed alpha
Helix 15	AB6	A	381	397	Right-handed alpha
Helix 16	AB7	D	11	28	Right-handed alpha
Helix 17	AB8	D	48	52	Right-handed 310
Helix 18	AB9	D	104	117	Right-handed alpha
Helix 19	AC1	D	140	157	Right-handed alpha
Helix 20	AC2	D	164	182	Right-handed alpha
Helix 21	AC3	D	189	198	Right-handed alpha
Helix 22	AC4	D	247	263	Right-handed alpha
Helix 23	AC5	D	266	277	Right-handed alpha
Helix 24	AC6	D	279	290	Right-handed alpha
Helix 25	AC7	D	293	319	Right-handed alpha
Helix 26	AC8	D	321	339	Right-handed alpha
Helix 27	AC9	D	344	357	Right-handed alpha
Helix 28	AD1	D	381	397	Right-handed alpha
Helix 29	AD2	C	11	28	Right-handed alpha
Helix 30	AD3	C	48	52	Right-handed 310
Helix 31	AD4	C	104	117	Right-handed alpha
Helix 32	AD5	C	140	157	Right-handed alpha
Helix 33	AD6	C	164	182	Right-handed alpha
Helix 34	AD7	C	189	198	Right-handed alpha
Helix 35	AD8	C	213	217	Right-handed alpha
Helix 36	AD9	C	225	228	Right-handed 310
Helix 37	AE1	C	247	263	Right-handed alpha
Helix 38	AE2	C	266	277	Right-handed alpha
Helix 39	AE3	C	279	290	Right-handed alpha
Helix 40	AE4	C	293	319	Right-handed alpha
Helix 41	AE5	C	321	339	Right-handed alpha
Helix 42	AE6	C	344	357	Right-handed alpha
Helix 43	AE7	C	381	397	Right-handed alpha
Helix 44	AE8	B	11	28	Right-handed alpha
Helix 45	AE9	B	48	52	Right-handed 310
Helix 46	AF1	B	104	117	Right-handed alpha
Helix 47	AF2	B	140	157	Right-handed alpha
Helix 48	AF3	B	164	182	Right-handed alpha
Helix 49	AF4	B	189	198	Right-handed alpha
Helix 50	AF5	B	225	228	Right-handed 310
Helix 51	AF6	B	246	263	Right-handed alpha
Helix 52	AF7	B	266	277	Right-handed alpha
Helix 53	AF8	B	279	290	Right-handed alpha
Helix 54	AF9	B	293	319	Right-handed alpha
Helix 55	AG1	B	321	339	Right-handed alpha
Helix 56	AG2	B	344	357	Right-handed alpha
Helix 57	AG3	B	381	397	Right-handed alpha

There are 12 sheets in PDB entry 6TEP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	6	first strand
Strand 2	A	402	404	parallel
Strand 3	A	230	236	anti-parallel
Strand 4	A	372	378	anti-parallel
Strand 5	A	361	364	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	91	first strand
Strand 2	A	75	80	anti-parallel
Strand 3	A	125	131	parallel
Strand 4	A	57	70	anti-parallel
Strand 5	A	33	42	anti-parallel
Strand 6	A	413	416	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	202	207	anti-parallel
Strand 3	A	218	222	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	D	402	404	parallel
Strand 3	D	230	236	anti-parallel
Strand 4	D	372	378	anti-parallel
Strand 5	D	361	364	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	91	first strand
Strand 2	D	75	80	anti-parallel
Strand 3	D	125	131	parallel
Strand 4	D	57	70	anti-parallel
Strand 5	D	33	42	anti-parallel
Strand 6	D	413	415	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	55	first strand
Strand 2	D	202	207	anti-parallel
Strand 3	D	218	222	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	6	first strand
Strand 2	C	402	404	parallel
Strand 3	C	230	236	anti-parallel
Strand 4	C	372	378	anti-parallel
Strand 5	C	361	364	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	91	first strand
Strand 2	C	75	80	anti-parallel
Strand 3	C	125	131	parallel
Strand 4	C	57	70	anti-parallel
Strand 5	C	33	42	anti-parallel
Strand 6	C	413	415	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	202	207	anti-parallel
Strand 3	C	218	222	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	91	first strand
Strand 2	B	75	80	anti-parallel
Strand 3	B	125	131	parallel
Strand 4	B	57	70	anti-parallel
Strand 5	B	33	42	anti-parallel
Strand 6	B	413	415	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	55	first strand
Strand 2	B	202	207	anti-parallel
Strand 3	B	218	222	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	364	first strand
Strand 2	B	372	378	anti-parallel
Strand 3	B	230	236	anti-parallel
Strand 4	B	402	404	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6TEP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6TEP