Analysis of interatomic Contacts of Structural Units in PDB entry:
6TER

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6TER entry

There are 4 chains in PDB entry 6TER (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 418
B	MET 1	LEU 418
C	MET 1	ALA 416
D	MET 1	LEU 54

There are 59 helices in PDB entry 6TER. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	28	Right-handed alpha
Helix 2	AA2	A	48	52	Right-handed 310
Helix 3	AA3	A	104	117	Right-handed alpha
Helix 4	AA4	A	140	157	Right-handed alpha
Helix 5	AA5	A	164	182	Right-handed alpha
Helix 6	AA6	A	189	198	Right-handed alpha
Helix 7	AA7	A	213	217	Right-handed alpha
Helix 8	AA8	A	224	228	Right-handed 310
Helix 9	AA9	A	246	263	Right-handed alpha
Helix 10	AB1	A	266	276	Right-handed alpha
Helix 11	AB2	A	279	290	Right-handed alpha
Helix 12	AB3	A	293	319	Right-handed alpha
Helix 13	AB4	A	321	339	Right-handed alpha
Helix 14	AB5	A	344	357	Right-handed alpha
Helix 15	AB6	A	381	397	Right-handed alpha
Helix 16	AB7	B	11	28	Right-handed alpha
Helix 17	AB8	B	48	52	Right-handed 310
Helix 18	AB9	B	104	118	Right-handed alpha
Helix 19	AC1	B	140	157	Right-handed alpha
Helix 20	AC2	B	164	182	Right-handed alpha
Helix 21	AC3	B	189	198	Right-handed alpha
Helix 22	AC4	B	213	217	Right-handed alpha
Helix 23	AC5	B	225	228	Right-handed 310
Helix 24	AC6	B	246	263	Right-handed alpha
Helix 25	AC7	B	266	276	Right-handed alpha
Helix 26	AC8	B	279	290	Right-handed alpha
Helix 27	AC9	B	293	320	Right-handed alpha
Helix 28	AD1	B	321	339	Right-handed alpha
Helix 29	AD2	B	344	356	Right-handed alpha
Helix 30	AD3	B	381	397	Right-handed alpha
Helix 31	AD4	C	11	28	Right-handed alpha
Helix 32	AD5	C	48	52	Right-handed 310
Helix 33	AD6	C	104	118	Right-handed alpha
Helix 34	AD7	C	140	157	Right-handed alpha
Helix 35	AD8	C	164	182	Right-handed alpha
Helix 36	AD9	C	189	198	Right-handed alpha
Helix 37	AE1	C	225	228	Right-handed 310
Helix 38	AE2	C	246	263	Right-handed alpha
Helix 39	AE3	C	266	277	Right-handed alpha
Helix 40	AE4	C	279	290	Right-handed alpha
Helix 41	AE5	C	293	319	Right-handed alpha
Helix 42	AE6	C	321	339	Right-handed alpha
Helix 43	AE7	C	344	356	Right-handed alpha
Helix 44	AE8	C	381	396	Right-handed alpha
Helix 45	AE9	D	11	28	Right-handed alpha
Helix 46	AF1	D	48	52	Right-handed 310
Helix 47	AF2	D	101	103	Right-handed 310
Helix 48	AF3	D	104	117	Right-handed alpha
Helix 49	AF4	D	140	157	Right-handed alpha
Helix 50	AF5	D	164	182	Right-handed alpha
Helix 51	AF6	D	189	198	Right-handed alpha
Helix 52	AF7	D	225	228	Right-handed 310
Helix 53	AF8	D	246	263	Right-handed alpha
Helix 54	AF9	D	266	276	Right-handed alpha
Helix 55	AG1	D	279	290	Right-handed alpha
Helix 56	AG2	D	293	320	Right-handed alpha
Helix 57	AG3	D	321	339	Right-handed alpha
Helix 58	AG4	D	344	357	Right-handed alpha
Helix 59	AG5	D	381	397	Right-handed alpha

There are 12 sheets in PDB entry 6TER. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	91	first strand
Strand 2	A	75	80	anti-parallel
Strand 3	A	125	131	parallel
Strand 4	A	57	70	anti-parallel
Strand 5	A	33	42	anti-parallel
Strand 6	A	413	416	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	202	207	anti-parallel
Strand 3	A	218	222	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	364	first strand
Strand 2	A	372	378	anti-parallel
Strand 3	A	230	236	anti-parallel
Strand 4	A	402	404	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	6	first strand
Strand 2	B	402	404	parallel
Strand 3	B	230	236	anti-parallel
Strand 4	B	372	378	anti-parallel
Strand 5	B	361	364	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	91	first strand
Strand 2	B	75	80	anti-parallel
Strand 3	B	125	131	parallel
Strand 4	B	57	70	anti-parallel
Strand 5	B	33	42	anti-parallel
Strand 6	B	413	415	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	55	first strand
Strand 2	B	202	207	anti-parallel
Strand 3	B	218	222	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	91	first strand
Strand 2	C	75	80	anti-parallel
Strand 3	C	125	131	parallel
Strand 4	C	57	70	anti-parallel
Strand 5	C	33	42	anti-parallel
Strand 6	C	413	416	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	202	207	anti-parallel
Strand 3	C	218	222	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	365	first strand
Strand 2	C	372	378	anti-parallel
Strand 3	C	230	236	anti-parallel
Strand 4	C	402	404	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	D	402	404	parallel
Strand 3	D	230	236	anti-parallel
Strand 4	D	372	378	anti-parallel
Strand 5	D	361	365	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	91	first strand
Strand 2	D	75	80	anti-parallel
Strand 3	D	125	131	parallel
Strand 4	D	57	70	anti-parallel
Strand 5	D	33	42	anti-parallel
Strand 6	D	413	415	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	55	first strand
Strand 2	D	202	207	anti-parallel
Strand 3	D	218	222	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6TER

Analysis of interatomic Contacts of Structural Units in PDB entry:
6TER