Analysis of interatomic Contacts of Structural Units in PDB entry:
6TFA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TFA entry

There are 4 chains in PDB entry 6TFA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2GLU 252
B
 PRO 2GLU 248
C
 PRO 2GLU 248
D
 PRO 2GLU 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 6TFA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 18Right-handed alpha
Helix 2
AA2
A
32 43Right-handed alpha
Helix 3
AA3
A
65 74Right-handed alpha
Helix 4
AA4
A
92 101Right-handed alpha
Helix 5
AA5
A
115 126Right-handed alpha
Helix 6
AA6
A
138 152Right-handed alpha
Helix 7
AA7
A
162 172Right-handed alpha
Helix 8
AA8
A
190 200Right-handed alpha
Helix 9
AA9
A
215 225Right-handed alpha
Helix 10
AB1
A
233 239Right-handed alpha
Helix 11
AB2
A
241 248Right-handed alpha
Helix 12
AB3
B
6 18Right-handed alpha
Helix 13
AB4
B
32 43Right-handed alpha
Helix 14
AB5
B
65 74Right-handed alpha
Helix 15
AB6
B
92 103Right-handed alpha
Helix 16
AB7
B
115 126Right-handed alpha
Helix 17
AB8
B
138 152Right-handed alpha
Helix 18
AB9
B
162 172Right-handed alpha
Helix 19
AC1
B
190 199Right-handed alpha
Helix 20
AC2
B
215 225Right-handed alpha
Helix 21
AC3
B
233 239Right-handed alpha
Helix 22
AC4
B
241 248Right-handed alpha
Helix 23
AC5
C
6 18Right-handed alpha
Helix 24
AC6
C
32 43Right-handed alpha
Helix 25
AC7
C
65 74Right-handed alpha
Helix 26
AC8
C
92 103Right-handed alpha
Helix 27
AC9
C
115 125Right-handed alpha
Helix 28
AD1
C
138 152Right-handed alpha
Helix 29
AD2
C
162 172Right-handed alpha
Helix 30
AD3
C
190 200Right-handed alpha
Helix 31
AD4
C
215 220Right-handed alpha
Helix 32
AD5
C
220 225Right-handed alpha
Helix 33
AD6
C
233 239Right-handed alpha
Helix 34
AD7
C
241 248Right-handed alpha
Helix 35
AD8
D
6 18Right-handed alpha
Helix 36
AD9
D
32 43Right-handed alpha
Helix 37
AE1
D
65 74Right-handed alpha
Helix 38
AE2
D
92 103Right-handed alpha
Helix 39
AE3
D
115 126Right-handed alpha
Helix 40
AE4
D
135 137Right-handed 310
Helix 41
AE5
D
138 152Right-handed alpha
Helix 42
AE6
D
162 173Right-handed alpha
Helix 43
AE7
D
190 200Right-handed alpha
Helix 44
AE8
D
215 225Right-handed alpha
Helix 45
AE9
D
234 240Right-handed 310
Helix 46
AF1
D
241 248Right-handed alpha
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There are 5 sheets in PDB entry 6TFA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 52first strand
Strand 2
A
79 83parallel
Strand 3
A
107 110parallel
Strand 4
A
129 133parallel
Strand 5
A
157 160parallel
Strand 6
A
176 179parallel
Strand 7
A
206 211parallel
Strand 8
A
230 232parallel
Strand 9
A
48 52parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 52first strand
Strand 2
B
79 83parallel
Strand 3
B
107 110parallel
Strand 4
B
129 133parallel
Strand 5
B
157 160parallel
Strand 6
B
176 179parallel
Strand 7
B
206 211parallel
Strand 8
B
230 232parallel
Strand 9
B
48 52parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 183first strand
Strand 2
B
188 189anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 52first strand
Strand 2
C
79 83parallel
Strand 3
C
107 110parallel
Strand 4
C
129 133parallel
Strand 5
C
157 160parallel
Strand 6
C
176 179parallel
Strand 7
C
206 211parallel
Strand 8
C
230 232parallel
Strand 9
C
48 52parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
48 52first strand
Strand 2
D
79 83parallel
Strand 3
D
107 110parallel
Strand 4
D
129 133parallel
Strand 5
D
157 160parallel
Strand 6
D
176 179parallel
Strand 7
D
206 211parallel
Strand 8
D
230 232parallel
Strand 9
D
48 52parallel
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