Analysis of interatomic Contacts of Structural Units in PDB entry:
6TFO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6TFO entry

There are 3 chains in PDB entry 6TFO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 26	PRO 448
B	HIS 27	PRO 448
C	SER 26	LYS 449

There are 21 helices in PDB entry 6TFO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	53	Right-handed 310
Helix 2	AA2	A	86	88	Right-handed 310
Helix 3	AA3	A	231	239	Right-handed 310
Helix 4	AA4	A	267	275	Right-handed alpha
Helix 5	AA5	A	317	323	Right-handed alpha
Helix 6	AA6	A	379	382	Right-handed 310
Helix 7	AA7	A	420	427	Right-handed 310
Helix 8	AA8	B	49	53	Right-handed 310
Helix 9	AA9	B	86	88	Right-handed 310
Helix 10	AB1	B	231	239	Right-handed 310
Helix 11	AB2	B	267	275	Right-handed alpha
Helix 12	AB3	B	317	324	Right-handed alpha
Helix 13	AB4	B	379	382	Right-handed 310
Helix 14	AB5	B	420	427	Right-handed 310
Helix 15	AB6	C	49	53	Right-handed 310
Helix 16	AB7	C	86	88	Right-handed 310
Helix 17	AB8	C	231	239	Right-handed 310
Helix 18	AB9	C	267	275	Right-handed alpha
Helix 19	AC1	C	317	324	Right-handed alpha
Helix 20	AC2	C	379	382	Right-handed 310
Helix 21	AC3	C	420	427	Right-handed 310

There are 18 sheets in PDB entry 6TFO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	48	first strand
Strand 2	A	30	39	anti-parallel
Strand 3	A	67	73	parallel
Strand 4	A	100	106	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	63	first strand
Strand 2	A	128	134	parallel
Strand 3	A	111	116	anti-parallel
Strand 4	A	83	84	anti-parallel
Strand 5	A	89	90	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	313	first strand
Strand 2	A	184	191	parallel
Strand 3	A	166	181	anti-parallel
Strand 4	A	207	214	parallel
Strand 5	A	246	252	anti-parallel
Strand 6	C	443	445	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	203	first strand
Strand 2	A	277	283	parallel
Strand 3	A	257	262	anti-parallel
Strand 4	A	225	226	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	331	first strand
Strand 2	A	293	302	anti-parallel
Strand 3	A	351	360	parallel
Strand 4	A	400	407	anti-parallel
Strand 5	A	374	377	anti-parallel
Strand 6	A	388	391	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	347	first strand
Strand 2	A	430	435	parallel
Strand 3	A	412	418	anti-parallel
Strand 4	A	365	370	anti-parallel
Strand 5	A	393	396	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	443	445	first strand
Strand 2	B	246	252	anti-parallel
Strand 3	B	207	214	anti-parallel
Strand 4	B	166	181	parallel
Strand 5	B	184	191	anti-parallel
Strand 6	B	312	313	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	48	first strand
Strand 2	B	30	39	anti-parallel
Strand 3	B	67	73	parallel
Strand 4	B	100	106	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	63	first strand
Strand 2	B	128	134	parallel
Strand 3	B	111	116	anti-parallel
Strand 4	B	83	84	anti-parallel
Strand 5	B	89	90	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	203	first strand
Strand 2	B	277	283	parallel
Strand 3	B	257	262	anti-parallel
Strand 4	B	225	226	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	331	first strand
Strand 2	B	293	302	anti-parallel
Strand 3	B	351	360	parallel
Strand 4	B	400	407	anti-parallel
Strand 5	B	374	377	anti-parallel
Strand 6	B	388	391	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	347	first strand
Strand 2	B	430	435	parallel
Strand 3	B	412	418	anti-parallel
Strand 4	B	365	370	anti-parallel
Strand 5	B	393	396	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	443	444	first strand
Strand 2	C	246	252	anti-parallel
Strand 3	C	207	214	anti-parallel
Strand 4	C	166	181	parallel
Strand 5	C	184	191	anti-parallel
Strand 6	C	312	313	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	48	first strand
Strand 2	C	30	39	anti-parallel
Strand 3	C	67	73	parallel
Strand 4	C	100	106	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	63	first strand
Strand 2	C	128	134	parallel
Strand 3	C	111	116	anti-parallel
Strand 4	C	83	84	anti-parallel
Strand 5	C	89	90	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	203	first strand
Strand 2	C	277	283	parallel
Strand 3	C	257	262	anti-parallel
Strand 4	C	225	226	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	331	first strand
Strand 2	C	293	302	anti-parallel
Strand 3	C	351	360	parallel
Strand 4	C	400	407	anti-parallel
Strand 5	C	374	377	anti-parallel
Strand 6	C	388	391	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	345	first strand
Strand 2	C	430	434	parallel
Strand 3	C	412	418	anti-parallel
Strand 4	C	365	370	anti-parallel
Strand 5	C	393	396	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6TFO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6TFO