Analysis of interatomic Contacts of Structural Units in PDB entry:
6TFP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6TFP entry

There are 5 chains in PDB entry 6TFP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 393	GLU 658
B	GLY 384	GLU 658
C	SER 394	GLU 657
D	TYR 392	GLU 657
E	SER 394	TRP 563

There are 75 helices in PDB entry 6TFP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	398	400	Right-handed 310
Helix 2	AA2	A	438	451	Right-handed alpha
Helix 3	AA3	A	481	489	Right-handed alpha
Helix 4	AA4	A	490	493	Right-handed 310
Helix 5	AA5	A	494	515	Right-handed alpha
Helix 6	AA6	A	523	525	Right-handed 310
Helix 7	AA7	A	541	546	Right-handed 310
Helix 8	AA8	A	548	553	Right-handed alpha
Helix 9	AA9	A	560	564	Right-handed 310
Helix 10	AB1	A	565	572	Right-handed alpha
Helix 11	AB2	A	575	592	Right-handed alpha
Helix 12	AB3	A	602	612	Right-handed alpha
Helix 13	AB4	A	623	633	Right-handed alpha
Helix 14	AB5	A	637	641	Right-handed 310
Helix 15	AB6	A	643	658	Right-handed alpha
Helix 16	AB7	B	398	400	Right-handed 310
Helix 17	AB8	B	438	451	Right-handed alpha
Helix 18	AB9	B	481	489	Right-handed alpha
Helix 19	AC1	B	490	493	Right-handed 310
Helix 20	AC2	B	494	515	Right-handed alpha
Helix 21	AC3	B	523	525	Right-handed 310
Helix 22	AC4	B	542	546	Right-handed 310
Helix 23	AC5	B	548	553	Right-handed alpha
Helix 24	AC6	B	560	564	Right-handed 310
Helix 25	AC7	B	565	572	Right-handed alpha
Helix 26	AC8	B	575	592	Right-handed alpha
Helix 27	AC9	B	602	612	Right-handed alpha
Helix 28	AD1	B	623	633	Right-handed alpha
Helix 29	AD2	B	637	641	Right-handed 310
Helix 30	AD3	B	643	658	Right-handed alpha
Helix 31	AD4	C	398	400	Right-handed 310
Helix 32	AD5	C	438	451	Right-handed alpha
Helix 33	AD6	C	481	490	Right-handed alpha
Helix 34	AD7	C	491	493	Right-handed 310
Helix 35	AD8	C	494	515	Right-handed alpha
Helix 36	AD9	C	523	525	Right-handed 310
Helix 37	AE1	C	541	546	Right-handed 310
Helix 38	AE2	C	548	553	Right-handed alpha
Helix 39	AE3	C	560	564	Right-handed 310
Helix 40	AE4	C	565	572	Right-handed alpha
Helix 41	AE5	C	575	592	Right-handed alpha
Helix 42	AE6	C	602	612	Right-handed alpha
Helix 43	AE7	C	623	633	Right-handed alpha
Helix 44	AE8	C	637	641	Right-handed 310
Helix 45	AE9	C	643	657	Right-handed alpha
Helix 46	AF1	D	392	396	Right-handed 310
Helix 47	AF2	D	398	400	Right-handed 310
Helix 48	AF3	D	438	452	Right-handed alpha
Helix 49	AF4	D	481	489	Right-handed alpha
Helix 50	AF5	D	490	493	Right-handed 310
Helix 51	AF6	D	494	515	Right-handed alpha
Helix 52	AF7	D	523	525	Right-handed 310
Helix 53	AF8	D	541	546	Right-handed 310
Helix 54	AF9	D	548	553	Right-handed alpha
Helix 55	AG1	D	560	564	Right-handed 310
Helix 56	AG2	D	565	572	Right-handed alpha
Helix 57	AG3	D	575	592	Right-handed alpha
Helix 58	AG4	D	602	612	Right-handed alpha
Helix 59	AG5	D	623	633	Right-handed alpha
Helix 60	AG6	D	637	641	Right-handed 310
Helix 61	AG7	D	643	656	Right-handed alpha
Helix 62	AG8	E	398	400	Right-handed 310
Helix 63	AG9	E	438	451	Right-handed alpha
Helix 64	AH1	E	481	490	Right-handed alpha
Helix 65	AH2	E	491	493	Right-handed 310
Helix 66	AH3	E	494	515	Right-handed alpha
Helix 67	AH4	E	523	525	Right-handed 310
Helix 68	AH5	E	541	546	Right-handed 310
Helix 69	AH6	E	548	553	Right-handed alpha
Helix 70	AH7	E	560	564	Right-handed 310
Helix 71	AH8	E	565	572	Right-handed alpha
Helix 72	AH9	E	575	592	Right-handed alpha
Helix 73	AI1	E	602	612	Right-handed alpha
Helix 74	AI2	E	623	633	Right-handed alpha
Helix 75	AI3	E	643	656	Right-handed alpha

There are 10 sheets in PDB entry 6TFP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	402	411	first strand
Strand 2	A	414	421	anti-parallel
Strand 3	A	425	431	anti-parallel
Strand 4	A	471	474	anti-parallel
Strand 5	A	460	464	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	527	529	first strand
Strand 2	A	535	537	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	402	411	first strand
Strand 2	B	414	421	anti-parallel
Strand 3	B	425	431	anti-parallel
Strand 4	B	471	474	anti-parallel
Strand 5	B	460	464	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	527	529	first strand
Strand 2	B	535	537	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	402	411	first strand
Strand 2	C	414	421	anti-parallel
Strand 3	C	425	431	anti-parallel
Strand 4	C	471	474	anti-parallel
Strand 5	C	460	464	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	527	529	first strand
Strand 2	C	535	537	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	402	411	first strand
Strand 2	D	414	421	anti-parallel
Strand 3	D	425	431	anti-parallel
Strand 4	D	471	474	anti-parallel
Strand 5	D	460	464	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	527	529	first strand
Strand 2	D	535	537	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	402	411	first strand
Strand 2	E	414	421	anti-parallel
Strand 3	E	425	431	anti-parallel
Strand 4	E	471	474	anti-parallel
Strand 5	E	460	464	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	527	529	first strand
Strand 2	E	535	537	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6TFP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6TFP