Analysis of interatomic Contacts of Structural Units in PDB entry:
6TFQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6TFQ entry

There are 2 chains in PDB entry 6TFQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 30	ASP 522
B	ALA 30	ASP 522

There are 38 helices in PDB entry 6TFQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	53	64	Right-handed alpha
Helix 2	AA2	A	76	80	Right-handed 310
Helix 3	AA3	A	115	127	Right-handed alpha
Helix 4	AA4	A	134	139	Right-handed 310
Helix 5	AA5	A	162	167	Right-handed alpha
Helix 6	AA6	A	170	174	Right-handed 310
Helix 7	AA7	A	177	185	Right-handed alpha
Helix 8	AA8	A	186	188	Right-handed 310
Helix 9	AA9	A	234	244	Right-handed alpha
Helix 10	AB1	A	255	265	Right-handed alpha
Helix 11	AB2	A	292	301	Right-handed alpha
Helix 12	AB3	A	304	313	Right-handed alpha
Helix 13	AB4	A	341	352	Right-handed alpha
Helix 14	AB5	A	367	382	Right-handed alpha
Helix 15	AB6	A	394	403	Right-handed alpha
Helix 16	AB7	A	419	429	Right-handed alpha
Helix 17	AB8	A	430	433	Right-handed 310
Helix 18	AB9	A	449	459	Right-handed alpha
Helix 19	AC1	A	461	480	Right-handed alpha
Helix 20	AC2	B	53	64	Right-handed alpha
Helix 21	AC3	B	76	80	Right-handed 310
Helix 22	AC4	B	115	127	Right-handed alpha
Helix 23	AC5	B	134	139	Right-handed 310
Helix 24	AC6	B	162	167	Right-handed alpha
Helix 25	AC7	B	170	174	Right-handed 310
Helix 26	AC8	B	177	185	Right-handed alpha
Helix 27	AC9	B	186	188	Right-handed 310
Helix 28	AD1	B	234	244	Right-handed alpha
Helix 29	AD2	B	255	264	Right-handed alpha
Helix 30	AD3	B	292	301	Right-handed alpha
Helix 31	AD4	B	304	313	Right-handed alpha
Helix 32	AD5	B	341	352	Right-handed alpha
Helix 33	AD6	B	367	382	Right-handed alpha
Helix 34	AD7	B	394	403	Right-handed alpha
Helix 35	AD8	B	419	429	Right-handed alpha
Helix 36	AD9	B	430	433	Right-handed 310
Helix 37	AE1	B	449	459	Right-handed alpha
Helix 38	AE2	B	461	480	Right-handed alpha

There are 12 sheets in PDB entry 6TFQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	204	first strand
Strand 2	A	208	213	anti-parallel
Strand 3	A	226	231	anti-parallel
Strand 4	A	33	38	parallel
Strand 5	A	249	251	parallel
Strand 6	A	482	495	anti-parallel
Strand 7	A	317	319	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	204	first strand
Strand 2	A	208	213	anti-parallel
Strand 3	A	226	231	anti-parallel
Strand 4	A	33	38	parallel
Strand 5	A	249	251	parallel
Strand 6	A	482	495	anti-parallel
Strand 7	A	268	283	anti-parallel
Strand 8	A	409	414	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	69	first strand
Strand 2	A	81	82	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	90	first strand
Strand 2	A	96	101	anti-parallel
Strand 3	A	151	156	anti-parallel
Strand 4	A	141	148	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	365	first strand
Strand 2	A	386	393	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	498	499	first strand
Strand 2	A	519	520	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	204	first strand
Strand 2	B	208	213	anti-parallel
Strand 3	B	226	231	anti-parallel
Strand 4	B	33	38	parallel
Strand 5	B	249	251	parallel
Strand 6	B	482	495	anti-parallel
Strand 7	B	317	319	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	204	first strand
Strand 2	B	208	213	anti-parallel
Strand 3	B	226	231	anti-parallel
Strand 4	B	33	38	parallel
Strand 5	B	249	251	parallel
Strand 6	B	482	495	anti-parallel
Strand 7	B	268	283	anti-parallel
Strand 8	B	409	414	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	69	first strand
Strand 2	B	81	82	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	91	first strand
Strand 2	B	96	101	anti-parallel
Strand 3	B	151	156	anti-parallel
Strand 4	B	141	148	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	365	first strand
Strand 2	B	386	393	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	498	499	first strand
Strand 2	B	519	520	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6TFQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6TFQ