Analysis of interatomic Contacts of Structural Units in PDB entry:
6TFR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6TFR entry

There are 5 chains in PDB entry 6TFR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 3	PRO 365
B	ALA 0	ALA 367
C	ALA 2	PRO 365
D	GLU 3	ALA 366
E	LEU 4	ALA 366

There are104 helices in PDB entry 6TFR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	17	Right-handed alpha
Helix 2	AA2	A	17	22	Right-handed alpha
Helix 3	AA3	A	25	37	Right-handed alpha
Helix 4	AA4	A	51	57	Right-handed alpha
Helix 5	AA5	A	60	62	Right-handed 310
Helix 6	AA6	A	63	82	Right-handed alpha
Helix 7	AA7	A	85	101	Right-handed alpha
Helix 8	AA8	A	102	107	Right-handed alpha
Helix 9	AA9	A	107	112	Right-handed alpha
Helix 10	AB1	A	123	142	Right-handed alpha
Helix 11	AB2	A	146	164	Right-handed alpha
Helix 12	AB3	A	177	196	Right-handed alpha
Helix 13	AB4	A	198	201	Right-handed 310
Helix 14	AB5	A	202	211	Right-handed alpha
Helix 15	AB6	A	238	251	Right-handed alpha
Helix 16	AB7	A	253	268	Right-handed alpha
Helix 17	AB8	A	295	308	Right-handed alpha
Helix 18	AB9	A	309	321	Right-handed alpha
Helix 19	AC1	A	322	324	Right-handed 310
Helix 20	AC2	A	342	353	Right-handed alpha
Helix 21	AC3	A	355	361	Right-handed alpha
Helix 22	AC4	B	11	17	Right-handed alpha
Helix 23	AC5	B	17	22	Right-handed alpha
Helix 24	AC6	B	25	37	Right-handed alpha
Helix 25	AC7	B	51	57	Right-handed alpha
Helix 26	AC8	B	60	62	Right-handed 310
Helix 27	AC9	B	63	82	Right-handed alpha
Helix 28	AD1	B	85	101	Right-handed alpha
Helix 29	AD2	B	102	107	Right-handed alpha
Helix 30	AD3	B	107	112	Right-handed alpha
Helix 31	AD4	B	123	142	Right-handed alpha
Helix 32	AD5	B	146	164	Right-handed alpha
Helix 33	AD6	B	177	196	Right-handed alpha
Helix 34	AD7	B	198	201	Right-handed 310
Helix 35	AD8	B	202	214	Right-handed alpha
Helix 36	AD9	B	238	251	Right-handed alpha
Helix 37	AE1	B	253	268	Right-handed alpha
Helix 38	AE2	B	295	308	Right-handed alpha
Helix 39	AE3	B	309	321	Right-handed alpha
Helix 40	AE4	B	322	324	Right-handed 310
Helix 41	AE5	B	342	353	Right-handed alpha
Helix 42	AE6	B	355	361	Right-handed alpha
Helix 43	AE7	C	11	22	Right-handed alpha
Helix 44	AE8	C	25	37	Right-handed alpha
Helix 45	AE9	C	51	57	Right-handed alpha
Helix 46	AF1	C	60	62	Right-handed 310
Helix 47	AF2	C	63	82	Right-handed alpha
Helix 48	AF3	C	85	101	Right-handed alpha
Helix 49	AF4	C	102	107	Right-handed alpha
Helix 50	AF5	C	107	112	Right-handed alpha
Helix 51	AF6	C	123	142	Right-handed alpha
Helix 52	AF7	C	146	164	Right-handed alpha
Helix 53	AF8	C	177	196	Right-handed alpha
Helix 54	AF9	C	198	201	Right-handed 310
Helix 55	AG1	C	202	211	Right-handed alpha
Helix 56	AG2	C	238	250	Right-handed alpha
Helix 57	AG3	C	253	268	Right-handed alpha
Helix 58	AG4	C	295	308	Right-handed alpha
Helix 59	AG5	C	309	321	Right-handed alpha
Helix 60	AG6	C	322	324	Right-handed 310
Helix 61	AG7	C	342	353	Right-handed alpha
Helix 62	AG8	C	355	361	Right-handed alpha
Helix 63	AG9	D	11	17	Right-handed alpha
Helix 64	AH1	D	17	22	Right-handed alpha
Helix 65	AH2	D	25	37	Right-handed alpha
Helix 66	AH3	D	51	57	Right-handed alpha
Helix 67	AH4	D	60	62	Right-handed 310
Helix 68	AH5	D	63	82	Right-handed alpha
Helix 69	AH6	D	85	101	Right-handed alpha
Helix 70	AH7	D	102	107	Right-handed alpha
Helix 71	AH8	D	107	112	Right-handed alpha
Helix 72	AH9	D	123	142	Right-handed alpha
Helix 73	AI1	D	146	164	Right-handed alpha
Helix 74	AI2	D	177	196	Right-handed alpha
Helix 75	AI3	D	198	201	Right-handed 310
Helix 76	AI4	D	202	211	Right-handed alpha
Helix 77	AI5	D	238	251	Right-handed alpha
Helix 78	AI6	D	253	268	Right-handed alpha
Helix 79	AI7	D	295	308	Right-handed alpha
Helix 80	AI8	D	309	321	Right-handed alpha
Helix 81	AI9	D	322	324	Right-handed 310
Helix 82	AJ1	D	342	353	Right-handed alpha
Helix 83	AJ2	D	355	361	Right-handed alpha
Helix 84	AJ3	E	11	17	Right-handed alpha
Helix 85	AJ4	E	17	22	Right-handed alpha
Helix 86	AJ5	E	25	37	Right-handed alpha
Helix 87	AJ6	E	51	57	Right-handed alpha
Helix 88	AJ7	E	60	62	Right-handed 310
Helix 89	AJ8	E	63	82	Right-handed alpha
Helix 90	AJ9	E	85	101	Right-handed alpha
Helix 91	AK1	E	102	107	Right-handed alpha
Helix 92	AK2	E	107	112	Right-handed alpha
Helix 93	AK3	E	123	142	Right-handed alpha
Helix 94	AK4	E	146	164	Right-handed alpha
Helix 95	AK5	E	177	196	Right-handed alpha
Helix 96	AK6	E	198	201	Right-handed 310
Helix 97	AK7	E	202	211	Right-handed alpha
Helix 98	AK8	E	238	251	Right-handed alpha
Helix 99	AK9	E	253	268	Right-handed alpha
Helix 100	AL1	E	295	308	Right-handed alpha
Helix 101	AL2	E	309	321	Right-handed alpha
Helix 102	AL3	E	322	324	Right-handed 310
Helix 103	AL4	E	342	353	Right-handed alpha
Helix 104	AL5	E	355	361	Right-handed alpha

There are 20 sheets in PDB entry 6TFR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	216	first strand
Strand 2	A	221	222	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	227	first strand
Strand 2	A	232	233	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	272	first strand
Strand 2	A	277	280	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	329	first strand
Strand 2	A	332	335	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	216	first strand
Strand 2	B	221	222	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	227	first strand
Strand 2	B	232	233	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	272	first strand
Strand 2	B	277	280	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	329	first strand
Strand 2	B	332	335	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	216	first strand
Strand 2	C	221	222	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	227	first strand
Strand 2	C	232	233	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	272	first strand
Strand 2	C	277	280	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	326	329	first strand
Strand 2	C	332	335	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	215	216	first strand
Strand 2	D	221	222	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	227	first strand
Strand 2	D	232	233	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	269	272	first strand
Strand 2	D	277	280	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	326	329	first strand
Strand 2	D	332	335	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	215	216	first strand
Strand 2	E	221	222	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	226	227	first strand
Strand 2	E	232	233	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	269	272	first strand
Strand 2	E	277	280	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	326	329	first strand
Strand 2	E	332	335	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6TFR

Analysis of interatomic Contacts of Structural Units in PDB entry:
6TFR