Analysis of interatomic Contacts of Structural Units in PDB entry:
6TFS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6TFS entry

There are 2 chains in PDB entry 6TFS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ASP 494
B	ALA 2	ASP 494

There are 38 helices in PDB entry 6TFS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	36	Right-handed alpha
Helix 2	AA2	A	48	52	Right-handed 310
Helix 3	AA3	A	87	99	Right-handed alpha
Helix 4	AA4	A	106	111	Right-handed 310
Helix 5	AA5	A	134	139	Right-handed alpha
Helix 6	AA6	A	142	146	Right-handed 310
Helix 7	AA7	A	149	157	Right-handed alpha
Helix 8	AA8	A	158	160	Right-handed 310
Helix 9	AA9	A	206	216	Right-handed alpha
Helix 10	AB1	A	227	237	Right-handed alpha
Helix 11	AB2	A	264	273	Right-handed alpha
Helix 12	AB3	A	276	285	Right-handed alpha
Helix 13	AB4	A	313	324	Right-handed alpha
Helix 14	AB5	A	339	354	Right-handed alpha
Helix 15	AB6	A	366	375	Right-handed alpha
Helix 16	AB7	A	391	401	Right-handed alpha
Helix 17	AB8	A	402	405	Right-handed 310
Helix 18	AB9	A	421	431	Right-handed alpha
Helix 19	AC1	A	433	452	Right-handed alpha
Helix 20	AC2	B	25	36	Right-handed alpha
Helix 21	AC3	B	48	52	Right-handed 310
Helix 22	AC4	B	87	99	Right-handed alpha
Helix 23	AC5	B	106	111	Right-handed 310
Helix 24	AC6	B	134	139	Right-handed alpha
Helix 25	AC7	B	142	146	Right-handed 310
Helix 26	AC8	B	149	157	Right-handed alpha
Helix 27	AC9	B	158	160	Right-handed 310
Helix 28	AD1	B	206	216	Right-handed alpha
Helix 29	AD2	B	227	237	Right-handed alpha
Helix 30	AD3	B	264	273	Right-handed alpha
Helix 31	AD4	B	276	285	Right-handed alpha
Helix 32	AD5	B	313	324	Right-handed alpha
Helix 33	AD6	B	339	354	Right-handed alpha
Helix 34	AD7	B	366	375	Right-handed alpha
Helix 35	AD8	B	391	401	Right-handed alpha
Helix 36	AD9	B	402	405	Right-handed 310
Helix 37	AE1	B	421	431	Right-handed alpha
Helix 38	AE2	B	433	451	Right-handed alpha

There are 12 sheets in PDB entry 6TFS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	176	first strand
Strand 2	A	180	185	anti-parallel
Strand 3	A	198	203	anti-parallel
Strand 4	A	5	10	parallel
Strand 5	A	221	223	parallel
Strand 6	A	454	467	anti-parallel
Strand 7	A	289	291	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	176	first strand
Strand 2	A	180	185	anti-parallel
Strand 3	A	198	203	anti-parallel
Strand 4	A	5	10	parallel
Strand 5	A	221	223	parallel
Strand 6	A	454	467	anti-parallel
Strand 7	A	240	255	anti-parallel
Strand 8	A	381	386	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	41	first strand
Strand 2	A	53	54	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	62	first strand
Strand 2	A	68	73	anti-parallel
Strand 3	A	123	128	anti-parallel
Strand 4	A	113	120	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	337	first strand
Strand 2	A	358	365	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	470	471	first strand
Strand 2	A	491	492	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	176	first strand
Strand 2	B	180	185	anti-parallel
Strand 3	B	198	203	anti-parallel
Strand 4	B	5	10	parallel
Strand 5	B	221	223	parallel
Strand 6	B	454	467	anti-parallel
Strand 7	B	289	291	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	176	first strand
Strand 2	B	180	185	anti-parallel
Strand 3	B	198	203	anti-parallel
Strand 4	B	5	10	parallel
Strand 5	B	221	223	parallel
Strand 6	B	454	467	anti-parallel
Strand 7	B	240	255	anti-parallel
Strand 8	B	381	386	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	41	first strand
Strand 2	B	53	54	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	63	first strand
Strand 2	B	68	73	anti-parallel
Strand 3	B	123	128	anti-parallel
Strand 4	B	113	120	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	337	first strand
Strand 2	B	358	365	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	470	471	first strand
Strand 2	B	491	492	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6TFS

Analysis of interatomic Contacts of Structural Units in PDB entry:
6TFS