Analysis of interatomic Contacts of Structural Units in PDB entry:
6TGV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6TGV entry

There are 4 chains in PDB entry 6TGV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	GLN 412
B	ALA 3	GLN 412
C	SER 2	GLN 412
D	SER 2	ASN 307

There are 60 helices in PDB entry 6TGV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	30	Right-handed alpha
Helix 2	AA2	A	39	44	Right-handed alpha
Helix 3	AA3	A	47	56	Right-handed alpha
Helix 4	AA4	A	66	70	Right-handed 310
Helix 5	AA5	A	73	78	Right-handed alpha
Helix 6	AA6	A	88	98	Right-handed alpha
Helix 7	AA7	A	102	111	Right-handed alpha
Helix 8	AA8	A	122	127	Right-handed alpha
Helix 9	AA9	A	128	142	Right-handed alpha
Helix 10	AB1	A	165	179	Right-handed alpha
Helix 11	AB2	A	215	227	Right-handed alpha
Helix 12	AB3	A	255	267	Right-handed alpha
Helix 13	AB4	A	309	320	Right-handed alpha
Helix 14	AB5	A	344	355	Right-handed alpha
Helix 15	AB6	A	393	410	Right-handed alpha
Helix 16	AB7	B	16	30	Right-handed alpha
Helix 17	AB8	B	40	45	Right-handed 310
Helix 18	AB9	B	47	56	Right-handed alpha
Helix 19	AC1	B	66	69	Right-handed 310
Helix 20	AC2	B	70	78	Right-handed alpha
Helix 21	AC3	B	88	98	Right-handed alpha
Helix 22	AC4	B	102	111	Right-handed alpha
Helix 23	AC5	B	122	128	Right-handed alpha
Helix 24	AC6	B	128	141	Right-handed alpha
Helix 25	AC7	B	165	179	Right-handed alpha
Helix 26	AC8	B	215	227	Right-handed alpha
Helix 27	AC9	B	255	267	Right-handed alpha
Helix 28	AD1	B	268	270	Right-handed 310
Helix 29	AD2	B	309	321	Right-handed alpha
Helix 30	AD3	B	344	355	Right-handed alpha
Helix 31	AD4	B	393	412	Right-handed alpha
Helix 32	AD5	C	16	30	Right-handed alpha
Helix 33	AD6	C	40	45	Right-handed 310
Helix 34	AD7	C	47	56	Right-handed alpha
Helix 35	AD8	C	70	78	Right-handed alpha
Helix 36	AD9	C	88	98	Right-handed alpha
Helix 37	AE1	C	102	111	Right-handed alpha
Helix 38	AE2	C	122	127	Right-handed alpha
Helix 39	AE3	C	128	141	Right-handed alpha
Helix 40	AE4	C	165	179	Right-handed alpha
Helix 41	AE5	C	215	227	Right-handed alpha
Helix 42	AE6	C	255	267	Right-handed alpha
Helix 43	AE7	C	268	270	Right-handed 310
Helix 44	AE8	C	309	320	Right-handed alpha
Helix 45	AE9	C	342	355	Right-handed alpha
Helix 46	AF1	C	393	412	Right-handed alpha
Helix 47	AF2	D	16	30	Right-handed alpha
Helix 48	AF3	D	40	45	Right-handed 310
Helix 49	AF4	D	47	56	Right-handed alpha
Helix 50	AF5	D	70	78	Right-handed alpha
Helix 51	AF6	D	88	98	Right-handed alpha
Helix 52	AF7	D	102	111	Right-handed alpha
Helix 53	AF8	D	122	127	Right-handed alpha
Helix 54	AF9	D	128	141	Right-handed alpha
Helix 55	AG1	D	165	179	Right-handed alpha
Helix 56	AG2	D	215	227	Right-handed alpha
Helix 57	AG3	D	255	267	Right-handed alpha
Helix 58	AG4	D	309	320	Right-handed alpha
Helix 59	AG5	D	346	355	Right-handed alpha
Helix 60	AG6	D	393	412	Right-handed alpha

There are 14 sheets in PDB entry 6TGV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	38	first strand
Strand 2	A	6	11	parallel
Strand 3	A	81	87	parallel
Strand 4	A	115	119	parallel
Strand 5	A	144	145	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	150	first strand
Strand 2	A	160	162	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	252	first strand
Strand 2	A	231	236	parallel
Strand 3	A	191	196	parallel
Strand 4	A	272	275	parallel
Strand 5	A	328	333	parallel
Strand 6	A	358	361	parallel
Strand 7	A	378	381	anti-parallel
Strand 8	A	386	388	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	202	first strand
Strand 2	A	207	211	anti-parallel
Strand 3	B	207	211	anti-parallel
Strand 4	B	200	202	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	284	first strand
Strand 2	A	304	306	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	38	first strand
Strand 2	B	6	11	parallel
Strand 3	B	81	87	parallel
Strand 4	B	115	119	parallel
Strand 5	B	144	145	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	252	first strand
Strand 2	B	231	236	parallel
Strand 3	B	191	196	parallel
Strand 4	B	272	275	parallel
Strand 5	B	329	334	parallel
Strand 6	B	358	362	parallel
Strand 7	B	378	381	anti-parallel
Strand 8	B	386	387	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	284	first strand
Strand 2	B	304	306	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	38	first strand
Strand 2	C	6	11	parallel
Strand 3	C	81	87	parallel
Strand 4	C	115	119	parallel
Strand 5	C	144	145	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	252	first strand
Strand 2	C	231	236	parallel
Strand 3	C	191	196	parallel
Strand 4	C	272	275	parallel
Strand 5	C	328	335	parallel
Strand 6	C	358	363	parallel
Strand 7	C	378	381	anti-parallel
Strand 8	C	386	388	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	202	first strand
Strand 2	C	207	211	anti-parallel
Strand 3	D	207	211	anti-parallel
Strand 4	D	201	202	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	284	first strand
Strand 2	C	301	306	anti-parallel
Strand 3	D	301	306	anti-parallel
Strand 4	D	282	284	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	38	first strand
Strand 2	D	6	11	parallel
Strand 3	D	81	87	parallel
Strand 4	D	115	119	parallel
Strand 5	D	144	145	parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	252	first strand
Strand 2	D	231	236	parallel
Strand 3	D	191	196	parallel
Strand 4	D	272	275	parallel
Strand 5	D	328	331	parallel
Strand 6	D	358	361	parallel
Strand 7	D	378	381	anti-parallel
Strand 8	D	386	387	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6TGV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6TGV