Analysis of interatomic Contacts of Structural Units in PDB entry:
6TGW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6TGW entry

There are 4 chains in PDB entry 6TGW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 27	LEU 507
B	LEU 27	LEU 507
C	VAL 29	LEU 507
D	VAL 29	LEU 507

There are 75 helices in PDB entry 6TGW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	67	83	Right-handed alpha
Helix 2	AA2	A	86	91	Right-handed alpha
Helix 3	AA3	A	92	110	Right-handed alpha
Helix 4	AA4	A	110	123	Right-handed alpha
Helix 5	AA5	A	125	132	Right-handed alpha
Helix 6	AA6	A	132	146	Right-handed alpha
Helix 7	AA7	A	147	151	Right-handed 310
Helix 8	AA8	A	182	197	Right-handed alpha
Helix 9	AA9	A	210	224	Right-handed alpha
Helix 10	AB1	A	236	246	Right-handed alpha
Helix 11	AB2	A	258	272	Right-handed alpha
Helix 12	AB3	A	294	308	Right-handed alpha
Helix 13	AB4	A	309	312	Right-handed 310
Helix 14	AB5	A	326	341	Right-handed alpha
Helix 15	AB6	A	358	375	Right-handed alpha
Helix 16	AB7	A	405	409	Right-handed 310
Helix 17	AB8	A	424	433	Right-handed alpha
Helix 18	AB9	A	447	458	Right-handed alpha
Helix 19	AC1	A	491	497	Right-handed alpha
Helix 20	AC2	B	67	83	Right-handed alpha
Helix 21	AC3	B	86	91	Right-handed alpha
Helix 22	AC4	B	92	110	Right-handed alpha
Helix 23	AC5	B	110	123	Right-handed alpha
Helix 24	AC6	B	125	132	Right-handed alpha
Helix 25	AC7	B	132	146	Right-handed alpha
Helix 26	AC8	B	182	197	Right-handed alpha
Helix 27	AC9	B	210	224	Right-handed alpha
Helix 28	AD1	B	236	246	Right-handed alpha
Helix 29	AD2	B	258	272	Right-handed alpha
Helix 30	AD3	B	294	308	Right-handed alpha
Helix 31	AD4	B	309	312	Right-handed 310
Helix 32	AD5	B	326	340	Right-handed alpha
Helix 33	AD6	B	358	376	Right-handed alpha
Helix 34	AD7	B	424	434	Right-handed alpha
Helix 35	AD8	B	447	458	Right-handed alpha
Helix 36	AD9	B	492	497	Right-handed alpha
Helix 37	AE1	C	67	83	Right-handed alpha
Helix 38	AE2	C	86	91	Right-handed alpha
Helix 39	AE3	C	92	110	Right-handed alpha
Helix 40	AE4	C	110	123	Right-handed alpha
Helix 41	AE5	C	125	132	Right-handed alpha
Helix 42	AE6	C	132	146	Right-handed alpha
Helix 43	AE7	C	147	151	Right-handed 310
Helix 44	AE8	C	182	197	Right-handed alpha
Helix 45	AE9	C	210	223	Right-handed alpha
Helix 46	AF1	C	239	246	Right-handed alpha
Helix 47	AF2	C	258	273	Right-handed alpha
Helix 48	AF3	C	294	308	Right-handed alpha
Helix 49	AF4	C	309	312	Right-handed 310
Helix 50	AF5	C	324	340	Right-handed alpha
Helix 51	AF6	C	358	376	Right-handed alpha
Helix 52	AF7	C	424	434	Right-handed alpha
Helix 53	AF8	C	447	458	Right-handed alpha
Helix 54	AF9	C	480	484	Right-handed 310
Helix 55	AG1	C	490	496	Right-handed 310
Helix 56	AG2	D	67	83	Right-handed alpha
Helix 57	AG3	D	86	91	Right-handed alpha
Helix 58	AG4	D	92	110	Right-handed alpha
Helix 59	AG5	D	110	123	Right-handed alpha
Helix 60	AG6	D	125	132	Right-handed alpha
Helix 61	AG7	D	132	146	Right-handed alpha
Helix 62	AG8	D	147	151	Right-handed 310
Helix 63	AG9	D	182	197	Right-handed alpha
Helix 64	AH1	D	210	223	Right-handed alpha
Helix 65	AH2	D	239	247	Right-handed alpha
Helix 66	AH3	D	258	272	Right-handed alpha
Helix 67	AH4	D	294	308	Right-handed alpha
Helix 68	AH5	D	309	312	Right-handed 310
Helix 69	AH6	D	326	340	Right-handed alpha
Helix 70	AH7	D	358	376	Right-handed alpha
Helix 71	AH8	D	405	409	Right-handed 310
Helix 72	AH9	D	424	433	Right-handed alpha
Helix 73	AI1	D	447	458	Right-handed alpha
Helix 74	AI2	D	480	484	Right-handed 310
Helix 75	AI3	D	491	496	Right-handed alpha

There are 16 sheets in PDB entry 6TGW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	36	first strand
Strand 2	A	39	41	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	52	first strand
Strand 2	A	59	64	anti-parallel

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There are 20 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	378	381	first strand
Strand 2	C	396	399	anti-parallel
Strand 3	C	416	422	parallel
Strand 4	C	319	323	parallel
Strand 5	C	286	289	parallel
Strand 6	C	440	444	parallel
Strand 7	C	462	465	parallel
Strand 8	A	498	506	parallel
Strand 9	A	162	170	anti-parallel
Strand 10	A	153	156	anti-parallel
Strand 11	B	153	156	anti-parallel
Strand 12	B	162	170	anti-parallel
Strand 13	B	498	506	anti-parallel
Strand 14	D	462	465	parallel
Strand 15	D	440	444	parallel
Strand 16	D	286	289	parallel
Strand 17	D	319	323	parallel
Strand 18	D	416	422	parallel
Strand 19	D	396	399	parallel
Strand 20	D	378	381	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	232	first strand
Strand 2	A	200	204	parallel
Strand 3	A	173	177	parallel
Strand 4	A	252	256	parallel
Strand 5	A	276	280	parallel

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There are 20 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	381	first strand
Strand 2	A	396	399	anti-parallel
Strand 3	A	416	422	parallel
Strand 4	A	319	323	parallel
Strand 5	A	286	289	parallel
Strand 6	A	440	444	parallel
Strand 7	A	462	465	parallel
Strand 8	C	498	506	parallel
Strand 9	C	162	170	anti-parallel
Strand 10	C	153	156	anti-parallel
Strand 11	D	153	156	anti-parallel
Strand 12	D	162	170	anti-parallel
Strand 13	D	498	506	anti-parallel
Strand 14	B	462	465	parallel
Strand 15	B	440	444	parallel
Strand 16	B	286	289	parallel
Strand 17	B	319	323	parallel
Strand 18	B	416	422	parallel
Strand 19	B	396	399	parallel
Strand 20	B	378	381	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	437	438	first strand
Strand 2	A	480	481	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	36	first strand
Strand 2	B	39	41	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	52	first strand
Strand 2	B	59	64	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	232	first strand
Strand 2	B	200	204	parallel
Strand 3	B	173	177	parallel
Strand 4	B	252	256	parallel
Strand 5	B	276	280	parallel
Strand 6	B	484	485	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	438	first strand
Strand 2	B	480	481	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	36	first strand
Strand 2	C	39	41	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	52	first strand
Strand 2	C	59	64	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	232	first strand
Strand 2	C	200	204	parallel
Strand 3	C	173	177	parallel
Strand 4	C	252	256	parallel
Strand 5	C	276	280	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	36	first strand
Strand 2	D	39	41	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	53	first strand
Strand 2	D	58	64	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	230	232	first strand
Strand 2	D	200	204	parallel
Strand 3	D	173	177	parallel
Strand 4	D	252	256	parallel
Strand 5	D	276	280	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6TGW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6TGW