Analysis of interatomic Contacts of Structural Units in PDB entry:
6TGX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TGX entry

There are 4 chains in PDB entry 6TGX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 24SER 200
B
 THR 24ASN 198
C
 MET 2ALA 5
D
 MET 2ALA 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6TGX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 33Right-handed 310
Helix 2
AA2
A
34 46Right-handed alpha
Helix 3
AA3
A
51 61Right-handed alpha
Helix 4
AA4
A
94 96Right-handed 310
Helix 5
AA5
A
98 102Right-handed 310
Helix 6
AA6
A
123 126Right-handed 310
Helix 7
AA7
A
129 144Right-handed alpha
Helix 8
AA8
A
159 169Right-handed alpha
Helix 9
AA9
B
31 33Right-handed 310
Helix 10
AB1
B
34 46Right-handed alpha
Helix 11
AB2
B
51 61Right-handed alpha
Helix 12
AB3
B
94 96Right-handed 310
Helix 13
AB4
B
123 126Right-handed 310
Helix 14
AB5
B
129 144Right-handed alpha
Helix 15
AB6
B
159 169Right-handed alpha
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There are 2 sheets in PDB entry 6TGX. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
64 71anti-parallel
Strand 3
A
82 92anti-parallel
Strand 4
A
112 121anti-parallel
Strand 5
A
148 156parallel
Strand 6
A
186 196anti-parallel
Strand 7
A
172 183anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 28first strand
Strand 2
B
64 71anti-parallel
Strand 3
B
82 92anti-parallel
Strand 4
B
112 121anti-parallel
Strand 5
B
148 156parallel
Strand 6
B
186 196anti-parallel
Strand 7
B
172 183anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il