Analysis of interatomic Contacts of Structural Units in PDB entry:
6THB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6THB entry

There are 2 chains in PDB entry 6THB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 209	LYS 625
B	GLY 208	LYS 625

There are 12 helices in PDB entry 6THB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	298	300	Right-handed 310
Helix 2	AA2	A	325	330	Right-handed alpha
Helix 3	AA3	A	331	335	Right-handed 310
Helix 4	AA4	A	354	356	Right-handed 310
Helix 5	AA5	A	396	401	Right-handed alpha
Helix 6	AA6	A	411	419	Right-handed alpha
Helix 7	AA7	B	298	300	Right-handed 310
Helix 8	AA8	B	325	330	Right-handed alpha
Helix 9	AA9	B	331	335	Right-handed 310
Helix 10	AB1	B	354	358	Right-handed 310
Helix 11	AB2	B	398	402	Right-handed 310
Helix 12	AB3	B	411	420	Right-handed alpha

There are 14 sheets in PDB entry 6THB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	226	first strand
Strand 2	A	612	617	anti-parallel
Strand 3	A	592	601	anti-parallel
Strand 4	A	579	589	anti-parallel
Strand 5	A	529	530	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	248	first strand
Strand 2	A	251	260	anti-parallel
Strand 3	A	270	280	anti-parallel
Strand 4	A	286	295	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	310	first strand
Strand 2	A	313	320	anti-parallel
Strand 3	A	336	342	anti-parallel
Strand 4	A	349	352	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	360	first strand
Strand 2	A	446	451	parallel
Strand 3	A	429	438	anti-parallel
Strand 4	A	380	389	anti-parallel
Strand 5	A	366	369	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	360	first strand
Strand 2	A	446	451	parallel
Strand 3	A	429	438	anti-parallel
Strand 4	A	380	389	anti-parallel
Strand 5	A	375	377	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	463	468	first strand
Strand 2	A	471	476	anti-parallel
Strand 3	A	486	492	anti-parallel
Strand 4	A	497	500	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	533	536	first strand
Strand 2	A	541	547	anti-parallel
Strand 3	A	556	561	anti-parallel
Strand 4	A	566	571	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	226	first strand
Strand 2	B	612	617	anti-parallel
Strand 3	B	592	601	anti-parallel
Strand 4	B	579	589	anti-parallel
Strand 5	B	529	530	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	248	first strand
Strand 2	B	251	260	anti-parallel
Strand 3	B	270	280	anti-parallel
Strand 4	B	286	295	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	310	first strand
Strand 2	B	313	320	anti-parallel
Strand 3	B	336	342	anti-parallel
Strand 4	B	349	352	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	360	first strand
Strand 2	B	446	451	parallel
Strand 3	B	429	438	anti-parallel
Strand 4	B	380	389	anti-parallel
Strand 5	B	366	368	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	360	first strand
Strand 2	B	446	451	parallel
Strand 3	B	429	438	anti-parallel
Strand 4	B	380	389	anti-parallel
Strand 5	B	375	377	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	463	468	first strand
Strand 2	B	471	476	anti-parallel
Strand 3	B	486	492	anti-parallel
Strand 4	B	497	500	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	533	536	first strand
Strand 2	B	541	547	anti-parallel
Strand 3	B	556	561	anti-parallel
Strand 4	B	566	571	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6THB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6THB