Analysis of interatomic Contacts of Structural Units in PDB entry:
6THH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6THH entry

There are 3 chains in PDB entry 6THH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 96
B
 MET 1LYS 96
C
 MSE 1GLY 844
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 6THH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 16Right-handed alpha
Helix 2
AA2
A
34 40Right-handed alpha
Helix 3
AA3
B
2 16Right-handed alpha
Helix 4
AA4
B
34 42Right-handed alpha
Helix 5
AA5
C
12 25Right-handed alpha
Helix 6
AA6
C
26 31Right-handed alpha
Helix 7
AA7
C
41 64Right-handed alpha
Helix 8
AA8
C
64 79Right-handed alpha
Helix 9
AA9
C
81 99Right-handed alpha
Helix 10
AB1
C
110 119Right-handed alpha
Helix 11
AB2
C
122 130Right-handed alpha
Helix 12
AB3
C
139 141Right-handed 310
Helix 13
AB4
C
142 156Right-handed alpha
Helix 14
AB5
C
162 173Right-handed alpha
Helix 15
AB6
C
175 185Right-handed alpha
Helix 16
AB7
C
197 211Right-handed alpha
Helix 17
AB8
C
240 253Right-handed alpha
Helix 18
AB9
C
258 274Right-handed alpha
Helix 19
AC1
C
274 281Right-handed alpha
Helix 20
AC2
C
284 290Right-handed alpha
Helix 21
AC3
C
298 302Right-handed 310
Helix 22
AC4
C
310 315Right-handed alpha
Helix 23
AC5
C
316 318Right-handed 310
Helix 24
AC6
C
319 335Right-handed alpha
Helix 25
AC7
C
338 349Right-handed alpha
Helix 26
AC8
C
366 372Right-handed 310
Helix 27
AC9
C
374 377Right-handed 310
Helix 28
AD1
C
378 402Right-handed alpha
Helix 29
AD2
C
402 407Right-handed alpha
Helix 30
AD3
C
480 489Right-handed alpha
Helix 31
AD4
C
507 511Right-handed alpha
Helix 32
AD5
C
532 540Right-handed alpha
Helix 33
AD6
C
555 557Right-handed 310
Helix 34
AD7
C
565 567Right-handed 310
Helix 35
AD8
C
577 585Right-handed alpha
Helix 36
AD9
C
587 595Right-handed alpha
Helix 37
AE1
C
625 629Right-handed 310
Helix 38
AE2
C
633 655Right-handed alpha
Helix 39
AE3
C
659 675Right-handed alpha
Helix 40
AE4
C
678 684Right-handed alpha
Helix 41
AE5
C
704 719Right-handed alpha
Helix 42
AE6
C
719 740Right-handed alpha
Helix 43
AE7
C
746 763Right-handed alpha
Helix 44
AE8
C
763 768Right-handed alpha
Helix 45
AE9
C
770 788Right-handed alpha
Helix 46
AF1
C
796 817Right-handed alpha
Helix 47
AF2
C
819 842Right-handed alpha
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There are 5 sheets in PDB entry 6THH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 51first strand
Strand 2
A
56 65anti-parallel
Strand 3
A
68 79anti-parallel
Strand 4
A
82 94anti-parallel
Strand 5
A
19 33anti-parallel
Strand 6
B
19 33anti-parallel
Strand 7
B
82 94anti-parallel
Strand 8
B
68 79anti-parallel
Strand 9
B
56 64anti-parallel
Strand 10
B
45 51anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
187 192first strand
Strand 2
C
228 233anti-parallel
Strand 3
C
222 223anti-parallel
Strand 4
C
505 506anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
427 428first strand
Strand 2
C
435 436anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
552 554first strand
Strand 2
C
559 563anti-parallel
Strand 3
C
496 500anti-parallel
Strand 4
C
600 603anti-parallel
Strand 5
C
619 620parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
513 515first strand
Strand 2
C
542 544anti-parallel
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