Analysis of interatomic Contacts of Structural Units in PDB entry:
6THO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6THO entry

There are 2 chains in PDB entry 6THO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2THR 217
B
 HIS 0GLN 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6THO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 25Right-handed alpha
Helix 2
AA2
A
30 38Right-handed alpha
Helix 3
AA3
A
46 59Right-handed alpha
Helix 4
AA4
A
79 82Right-handed 310
Helix 5
AA5
A
83 90Right-handed alpha
Helix 6
AA6
A
91 99Right-handed alpha
Helix 7
AA7
A
101 111Right-handed alpha
Helix 8
AA8
A
122 124Right-handed 310
Helix 9
AA9
A
125 138Right-handed alpha
Helix 10
AB1
A
151 154Right-handed 310
Helix 11
AB2
A
191 199Right-handed alpha
Helix 12
AB3
B
15 24Right-handed alpha
Helix 13
AB4
B
30 38Right-handed alpha
Helix 14
AB5
B
46 60Right-handed alpha
Helix 15
AB6
B
83 90Right-handed alpha
Helix 16
AB7
B
91 99Right-handed alpha
Helix 17
AB8
B
101 111Right-handed alpha
Helix 18
AB9
B
122 124Right-handed 310
Helix 19
AC1
B
125 139Right-handed alpha
Helix 20
AC2
B
151 154Right-handed 310
Helix 21
AC3
B
191 199Right-handed alpha
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There are 4 sheets in PDB entry 6THO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
187 190anti-parallel
Strand 3
A
173 176anti-parallel
Strand 4
A
159 168anti-parallel
Strand 5
A
142 149anti-parallel
Strand 6
A
210 215anti-parallel
Strand 7
A
115 120anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
207 208anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
187 190anti-parallel
Strand 3
B
173 176anti-parallel
Strand 4
B
159 168anti-parallel
Strand 5
B
142 149anti-parallel
Strand 6
B
210 215anti-parallel
Strand 7
B
115 120anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 202first strand
Strand 2
B
207 208anti-parallel
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