Analysis of interatomic Contacts of Structural Units in PDB entry:
6TI2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TI2 entry

There are 4 chains in PDB entry 6TI2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 28CYS 289
C
 SER 28CYS 289
E
 THR 41HIS 203
A
 THR 41HIS 203
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 6TI2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
28 48Right-handed alpha
Helix 2
AA2
B
49 64Right-handed alpha
Helix 3
AA3
B
69 81Right-handed alpha
Helix 4
AA4
B
86 94Right-handed alpha
Helix 5
AA5
B
98 102Right-handed 310
Helix 6
AA6
B
146 157Right-handed alpha
Helix 7
AA7
B
165 186Right-handed alpha
Helix 8
AA8
B
186 198Right-handed alpha
Helix 9
AA9
B
198 207Right-handed alpha
Helix 10
AB1
B
212 225Right-handed alpha
Helix 11
AB2
B
226 244Right-handed alpha
Helix 12
AB3
B
257 269Right-handed alpha
Helix 13
AB4
B
269 284Right-handed alpha
Helix 14
AB5
B
285 289Right-handed 310
Helix 15
AB6
C
29 48Right-handed alpha
Helix 16
AB7
C
49 64Right-handed alpha
Helix 17
AB8
C
69 81Right-handed alpha
Helix 18
AB9
C
86 94Right-handed alpha
Helix 19
AC1
C
95 100Right-handed alpha
Helix 20
AC2
C
146 158Right-handed alpha
Helix 21
AC3
C
165 186Right-handed alpha
Helix 22
AC4
C
186 198Right-handed alpha
Helix 23
AC5
C
198 207Right-handed alpha
Helix 24
AC6
C
212 225Right-handed alpha
Helix 25
AC7
C
226 244Right-handed alpha
Helix 26
AC8
C
257 269Right-handed alpha
Helix 27
AC9
C
269 284Right-handed alpha
Helix 28
AD1
C
285 289Right-handed 310
Helix 29
AD2
E
175 183Right-handed alpha
Helix 30
AD3
A
56 60Right-handed 310
Helix 31
AD4
A
120 124Right-handed alpha
Helix 32
AD5
A
158 162Right-handed 310
Helix 33
AD6
A
175 182Right-handed alpha
Helix 34
AD7
A
185 188Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 6TI2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
46 49first strand
Strand 2
E
69 72anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
83 89first strand
Strand 2
E
171 174parallel
Strand 3
E
115 119anti-parallel
Strand 4
E
142 151parallel
Strand 5
E
132 137anti-parallel
Strand 6
E
190 196anti-parallel
Strand 7
E
83 89anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
A
69 72anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 89first strand
Strand 2
A
171 174parallel
Strand 3
A
115 119anti-parallel
Strand 4
A
142 151parallel
Strand 5
A
132 137anti-parallel
Strand 6
A
190 196anti-parallel
Strand 7
A
83 89anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il