Analysis of interatomic Contacts of Structural Units in PDB entry:
6TJ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TJ0 entry

There are 2 chains in PDB entry 6TJ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 222PRO 487
B
 SER 223ARG 475
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6TJ0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
233 236Right-handed 310
Helix 2
AA2
A
250 259Right-handed alpha
Helix 3
AA3
A
272 274Right-handed 310
Helix 4
AA4
A
275 291Right-handed alpha
Helix 5
AA5
A
306 317Right-handed alpha
Helix 6
AA6
A
327 338Right-handed alpha
Helix 7
AA7
A
350 356Right-handed alpha
Helix 8
AA8
A
368 382Right-handed alpha
Helix 9
AA9
A
403 411Right-handed alpha
Helix 10
AB1
A
435 437Right-handed 310
Helix 11
AB2
A
438 447Right-handed alpha
Helix 12
AB3
A
450 454Right-handed alpha
Helix 13
AB4
A
463 475Right-handed alpha
Helix 14
AB5
A
476 477Right-handed 310
Helix 15
AB6
A
478 482Right-handed 310
Helix 16
AB7
B
233 236Right-handed 310
Helix 17
AB8
B
250 259Right-handed alpha
Helix 18
AB9
B
272 274Right-handed 310
Helix 19
AC1
B
275 291Right-handed alpha
Helix 20
AC2
B
306 317Right-handed alpha
Helix 21
AC3
B
327 338Right-handed alpha
Helix 22
AC4
B
350 356Right-handed alpha
Helix 23
AC5
B
368 382Right-handed alpha
Helix 24
AC6
B
403 411Right-handed alpha
Helix 25
AC7
B
435 437Right-handed 310
Helix 26
AC8
B
438 447Right-handed alpha
Helix 27
AC9
B
450 454Right-handed alpha
Helix 28
AD1
B
463 475Right-handed alpha
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There are 4 sheets in PDB entry 6TJ0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 248first strand
Strand 2
A
228 231parallel
Strand 3
A
265 270parallel
Strand 4
A
295 300parallel
Strand 5
A
320 322parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
A
418 423parallel
Strand 3
A
426 432anti-parallel
Strand 4
A
391 398anti-parallel
Strand 5
A
455 461anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 248first strand
Strand 2
B
228 231parallel
Strand 3
B
265 270parallel
Strand 4
B
295 300parallel
Strand 5
B
320 322parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
365 366first strand
Strand 2
B
418 423parallel
Strand 3
B
426 432anti-parallel
Strand 4
B
391 398anti-parallel
Strand 5
B
455 461anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il