Analysis of interatomic Contacts of Structural Units in PDB entry:
6TJ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TJ6 entry

There are 3 chains in PDB entry 6TJ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 4LYS 134
B
 GLU 79LEU 214
C
 ALA 776VAL 818
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6TJ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 15Right-handed alpha
Helix 2
AA2
A
24 34Right-handed alpha
Helix 3
AA3
A
39 46Right-handed alpha
Helix 4
AA4
A
52 64Right-handed alpha
Helix 5
AA5
A
67 78Right-handed alpha
Helix 6
AA6
A
89 100Right-handed alpha
Helix 7
AA7
A
104 116Right-handed alpha
Helix 8
AA8
A
125 134Right-handed alpha
Helix 9
AA9
B
80 91Right-handed alpha
Helix 10
AB1
B
98 108Right-handed alpha
Helix 11
AB2
B
113 125Right-handed alpha
Helix 12
AB3
B
129 139Right-handed alpha
Helix 13
AB4
B
146 156Right-handed alpha
Helix 14
AB5
B
167 177Right-handed alpha
Helix 15
AB6
B
182 194Right-handed alpha
Helix 16
AB7
B
201 210Right-handed alpha
Helix 17
AB8
C
779 818Right-handed alpha
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There are 4 sheets in PDB entry 6TJ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
49 51anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
122 123anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 97first strand
Strand 2
B
127 128anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 166first strand
Strand 2
B
198 200anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il