Analysis of interatomic Contacts of Structural Units in PDB entry:
6TJF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6TJF entry

There are 6 chains in PDB entry 6TJF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	PRO 240
B	ASP 1	PRO 240
C	ASP 1	PRO 240
D	ASP 1	PRO 240
E	ASP 1	PRO 240
F	ASP 1	PRO 240

There are no helices in PDB entry 6TJF

There are 37 sheets in PDB entry 6TJF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	9	first strand
Strand 2	F	234	238	anti-parallel
Strand 3	F	226	229	anti-parallel
Strand 4	F	219	220	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	20	first strand
Strand 2	A	26	29	anti-parallel
Strand 3	A	34	38	anti-parallel
Strand 4	A	44	49	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	66	69	anti-parallel
Strand 3	A	74	78	anti-parallel
Strand 4	A	84	89	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	A	106	109	anti-parallel
Strand 3	A	114	118	anti-parallel
Strand 4	A	124	129	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	140	first strand
Strand 2	A	146	149	anti-parallel
Strand 3	A	154	158	anti-parallel
Strand 4	A	164	169	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	180	first strand
Strand 2	A	186	189	anti-parallel
Strand 3	A	194	198	anti-parallel
Strand 4	A	204	209	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	220	first strand
Strand 2	A	226	229	anti-parallel
Strand 3	A	234	238	anti-parallel
Strand 4	E	4	9	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	9	first strand
Strand 2	D	234	238	anti-parallel
Strand 3	D	226	230	anti-parallel
Strand 4	D	219	220	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	20	first strand
Strand 2	B	26	27	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	44	48	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	60	first strand
Strand 2	B	66	69	anti-parallel
Strand 3	B	74	78	anti-parallel
Strand 4	B	84	89	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	B	106	109	anti-parallel
Strand 3	B	114	118	anti-parallel
Strand 4	B	124	129	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	140	first strand
Strand 2	B	146	149	anti-parallel
Strand 3	B	154	158	anti-parallel
Strand 4	B	164	169	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	180	first strand
Strand 2	B	186	189	anti-parallel
Strand 3	B	194	198	anti-parallel
Strand 4	B	204	209	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	220	first strand
Strand 2	B	226	229	anti-parallel
Strand 3	B	234	238	anti-parallel
Strand 4	C	4	9	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	20	first strand
Strand 2	C	26	29	anti-parallel
Strand 3	C	34	38	anti-parallel
Strand 4	C	44	49	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	66	69	anti-parallel
Strand 3	C	74	78	anti-parallel
Strand 4	C	84	89	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	100	first strand
Strand 2	C	106	110	anti-parallel
Strand 3	C	114	118	anti-parallel
Strand 4	C	124	129	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	140	first strand
Strand 2	C	146	148	anti-parallel
Strand 3	C	154	158	anti-parallel
Strand 4	C	164	169	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	180	first strand
Strand 2	C	186	189	anti-parallel
Strand 3	C	194	198	anti-parallel
Strand 4	C	204	209	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	220	first strand
Strand 2	C	226	229	anti-parallel
Strand 3	C	234	238	anti-parallel
Strand 4	D	4	9	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	20	first strand
Strand 2	D	26	29	anti-parallel
Strand 3	D	34	38	anti-parallel
Strand 4	D	44	49	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	60	first strand
Strand 2	D	66	69	anti-parallel
Strand 3	D	74	78	anti-parallel
Strand 4	D	84	89	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	100	first strand
Strand 2	D	106	109	anti-parallel
Strand 3	D	114	118	anti-parallel
Strand 4	D	124	129	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	140	first strand
Strand 2	D	146	149	anti-parallel
Strand 3	D	154	158	anti-parallel
Strand 4	D	164	169	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	180	first strand
Strand 2	D	186	189	anti-parallel
Strand 3	D	194	198	anti-parallel
Strand 4	D	204	209	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	20	first strand
Strand 2	E	26	29	anti-parallel
Strand 3	E	34	38	anti-parallel
Strand 4	E	44	49	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	60	first strand
Strand 2	E	66	69	anti-parallel
Strand 3	E	74	78	anti-parallel
Strand 4	E	84	89	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	100	first strand
Strand 2	E	106	110	anti-parallel
Strand 3	E	114	118	anti-parallel
Strand 4	E	124	129	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	139	140	first strand
Strand 2	E	146	149	anti-parallel
Strand 3	E	154	158	anti-parallel
Strand 4	E	164	169	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	179	180	first strand
Strand 2	E	186	189	anti-parallel
Strand 3	E	194	198	anti-parallel
Strand 4	E	204	209	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	219	220	first strand
Strand 2	E	226	229	anti-parallel
Strand 3	E	234	238	anti-parallel
Strand 4	F	4	9	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	20	first strand
Strand 2	F	26	29	anti-parallel
Strand 3	F	34	38	anti-parallel
Strand 4	F	44	49	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	60	first strand
Strand 2	F	66	69	anti-parallel
Strand 3	F	74	78	anti-parallel
Strand 4	F	84	89	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	100	first strand
Strand 2	F	106	109	anti-parallel
Strand 3	F	114	118	anti-parallel
Strand 4	F	124	129	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	139	140	first strand
Strand 2	F	146	149	anti-parallel
Strand 3	F	154	158	anti-parallel
Strand 4	F	164	169	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	179	180	first strand
Strand 2	F	186	189	anti-parallel
Strand 3	F	194	198	anti-parallel
Strand 4	F	204	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6TJF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6TJF