Analysis of interatomic Contacts of Structural Units in PDB entry:
6TJR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TJR entry

There are 2 chains in PDB entry 6TJR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2ARG 341
B
 LYS 2ARG 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6TJR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 22Right-handed alpha
Helix 2
AA2
A
37 43Right-handed alpha
Helix 3
AA3
A
54 68Right-handed alpha
Helix 4
AA4
A
115 123Right-handed 310
Helix 5
AA5
A
133 142Right-handed alpha
Helix 6
AA6
A
168 172Right-handed 310
Helix 7
AA7
A
179 195Right-handed alpha
Helix 8
AA8
A
212 217Right-handed alpha
Helix 9
AA9
A
217 224Right-handed alpha
Helix 10
AB1
A
275 284Right-handed alpha
Helix 11
AB2
A
314 317Right-handed 310
Helix 12
AB3
A
321 338Right-handed alpha
Helix 13
AB4
A
339 341Right-handed 310
Helix 14
AB5
B
10 22Right-handed alpha
Helix 15
AB6
B
37 43Right-handed alpha
Helix 16
AB7
B
54 68Right-handed alpha
Helix 17
AB8
B
115 123Right-handed 310
Helix 18
AB9
B
133 142Right-handed alpha
Helix 19
AC1
B
168 172Right-handed 310
Helix 20
AC2
B
179 195Right-handed alpha
Helix 21
AC3
B
212 217Right-handed alpha
Helix 22
AC4
B
217 224Right-handed alpha
Helix 23
AC5
B
275 284Right-handed alpha
Helix 24
AC6
B
314 317Right-handed 310
Helix 25
AC7
B
321 338Right-handed alpha
Helix 26
AC8
B
339 341Right-handed 310
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There are 8 sheets in PDB entry 6TJR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 75first strand
Strand 2
A
27 30parallel
Strand 3
A
4 7parallel
Strand 4
A
105 107parallel
Strand 5
A
310 312parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 86first strand
Strand 2
A
89 94anti-parallel
Strand 3
A
99 102anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 113first strand
Strand 2
A
270 272anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
263 268parallel
Strand 3
A
157 164parallel
Strand 4
A
199 204parallel
Strand 5
A
228 239parallel
Strand 6
A
244 250anti-parallel
Strand 7
A
255 261anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 75first strand
Strand 2
B
27 30parallel
Strand 3
B
4 7parallel
Strand 4
B
104 107parallel
Strand 5
B
310 312parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 86first strand
Strand 2
B
89 94anti-parallel
Strand 3
B
99 102anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 113first strand
Strand 2
B
270 272anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 132first strand
Strand 2
B
263 268parallel
Strand 3
B
157 164parallel
Strand 4
B
199 204parallel
Strand 5
B
228 239parallel
Strand 6
B
244 250anti-parallel
Strand 7
B
255 261anti-parallel
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