Analysis of interatomic Contacts of Structural Units in PDB entry:
6TJT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TJT entry

There are 4 chains in PDB entry 6TJT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 273SER 431
B
 MET 274SER 431
D
 ILE 230ARG 232
F
 ILE 230ARG 232
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 6TJT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
289 291Right-handed 310
Helix 2
AA2
A
305 309Right-handed 310
Helix 3
AA3
B
289 291Right-handed 310
Helix 4
AA4
B
305 309Right-handed 310
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There are 8 sheets in PDB entry 6TJT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
329 332anti-parallel
Strand 3
A
406 411anti-parallel
Strand 4
A
361 366anti-parallel
Strand 5
A
373 375anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 404first strand
Strand 2
A
337 345anti-parallel
Strand 3
A
421 428anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 344first strand
Strand 2
A
394 397anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 360first strand
Strand 2
A
413 415anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
293 295first strand
Strand 2
B
329 332anti-parallel
Strand 3
B
406 411anti-parallel
Strand 4
B
361 366anti-parallel
Strand 5
B
373 375anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
402 404first strand
Strand 2
B
337 345anti-parallel
Strand 3
B
421 428anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
341 344first strand
Strand 2
B
394 397anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 360first strand
Strand 2
B
413 415anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il