Analysis of interatomic Contacts of Structural Units in PDB entry:
6TLC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6TLC entry

There are 4 chains in PDB entry 6TLC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL 136	ARG 688
A	VAL 136	PRO 689
D	GLY -1	THR 93
C	GLY -1	THR 93

There are 41 helices in PDB entry 6TLC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	138	186	Right-handed alpha
Helix 2	AA2	B	197	237	Right-handed alpha
Helix 3	AA3	B	238	252	Right-handed alpha
Helix 4	AA4	B	260	291	Right-handed alpha
Helix 5	AA5	B	296	320	Right-handed alpha
Helix 6	AA6	B	355	359	Right-handed 310
Helix 7	AA7	B	431	434	Right-handed 310
Helix 8	AA8	B	466	468	Right-handed 310
Helix 9	AA9	B	469	484	Right-handed alpha
Helix 10	AB1	B	491	495	Right-handed 310
Helix 11	AB2	B	501	514	Right-handed alpha
Helix 12	AB3	B	521	533	Right-handed alpha
Helix 13	AB4	B	545	550	Right-handed alpha
Helix 14	AB5	B	560	575	Right-handed alpha
Helix 15	AB6	B	576	582	Right-handed alpha
Helix 16	AB7	B	590	600	Right-handed alpha
Helix 17	AB8	B	642	646	Right-handed alpha
Helix 18	AB9	B	649	657	Right-handed alpha
Helix 19	AC1	B	679	684	Right-handed alpha
Helix 20	AC2	B	685	687	Right-handed 310
Helix 21	AC3	A	138	189	Right-handed alpha
Helix 22	AC4	A	197	237	Right-handed alpha
Helix 23	AC5	A	238	252	Right-handed alpha
Helix 24	AC6	A	260	291	Right-handed alpha
Helix 25	AC7	A	296	320	Right-handed alpha
Helix 26	AC8	A	355	359	Right-handed 310
Helix 27	AC9	A	431	434	Right-handed 310
Helix 28	AD1	A	466	468	Right-handed 310
Helix 29	AD2	A	469	484	Right-handed alpha
Helix 30	AD3	A	491	495	Right-handed 310
Helix 31	AD4	A	501	514	Right-handed alpha
Helix 32	AD5	A	521	534	Right-handed alpha
Helix 33	AD6	A	545	550	Right-handed alpha
Helix 34	AD7	A	560	575	Right-handed alpha
Helix 35	AD8	A	576	581	Right-handed alpha
Helix 36	AD9	A	582	584	Right-handed 310
Helix 37	AE1	A	590	601	Right-handed alpha
Helix 38	AE2	A	642	646	Right-handed alpha
Helix 39	AE3	A	649	657	Right-handed alpha
Helix 40	AE4	A	679	684	Right-handed alpha
Helix 41	AE5	A	685	687	Right-handed 310

There are 20 sheets in PDB entry 6TLC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	328	first strand
Strand 2	B	345	351	anti-parallel
Strand 3	B	404	416	anti-parallel
Strand 4	B	383	388	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	340	first strand
Strand 2	B	461	464	parallel
Strand 3	B	436	437	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	393	first strand
Strand 2	B	363	368	anti-parallel
Strand 3	B	439	447	anti-parallel
Strand 4	B	450	457	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	499	500	first strand
Strand 2	B	543	544	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	606	610	first strand
Strand 2	B	618	626	anti-parallel
Strand 3	B	632	636	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	606	610	first strand
Strand 2	B	618	626	anti-parallel
Strand 3	B	640	641	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	660	661	first strand
Strand 2	B	664	665	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	672	673	first strand
Strand 2	B	677	678	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	328	first strand
Strand 2	A	345	351	anti-parallel
Strand 3	A	404	415	anti-parallel
Strand 4	A	384	388	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	340	first strand
Strand 2	A	461	464	parallel
Strand 3	A	436	437	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	393	first strand
Strand 2	A	363	368	anti-parallel
Strand 3	A	439	447	anti-parallel
Strand 4	A	450	457	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	500	first strand
Strand 2	A	543	544	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	606	610	first strand
Strand 2	A	618	626	anti-parallel
Strand 3	A	632	636	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	606	610	first strand
Strand 2	A	618	626	anti-parallel
Strand 3	A	640	641	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	659	660	first strand
Strand 2	A	665	666	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	672	673	first strand
Strand 2	A	677	678	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	14	first strand
Strand 2	D	17	21	anti-parallel
Strand 3	D	56	60	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	51	first strand
Strand 2	D	29	38	anti-parallel
Strand 3	D	67	76	anti-parallel
Strand 4	D	87	92	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	14	first strand
Strand 2	C	17	21	anti-parallel
Strand 3	C	56	60	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	51	first strand
Strand 2	C	29	38	anti-parallel
Strand 3	C	67	76	anti-parallel
Strand 4	C	87	92	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6TLC

Analysis of interatomic Contacts of Structural Units in PDB entry:
6TLC